ukhsa-collaboration snapperdb issues

ukhsa-collaboration / snapperdb

GNU General Public License v3.0

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issues

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Conda installation fails

#27 Antonia-Chalka opened 1 year ago
0
Python 3 support

#26 jb2cool opened 3 years ago
0
Can't populating database with VCF

#25 phongphak opened 5 years ago
1
-x calculation to include ignored positions

#24 gingerdave269 opened 5 years ago
0
Trying to run fastq to db.

#23 DolapoA opened 5 years ago
3
Reproducing "Tutorial for setting up SnapperDB Instance" : Not getting the sames SNP Address

#22 ScaonE closed 5 years ago
1
make_snpbd : invalid GATK command

#21 ScaonE closed 5 years ago
2
get_the_snps -n and -ng

#20 jmattock closed 5 years ago
1
a flag to allow to overwrite duplicate entries into the database

#19 Wang-Jing-NZ opened 6 years ago
1
install from pip not working?

#18 flashton2003 closed 5 years ago
2
install from conda not working

#17 flashton2003 closed 5 years ago
1
Possible to work with MySQL?

#16 Wang-Jing-NZ closed 6 years ago
1
rec_file option

#15 ConstantinV closed 6 years ago
2
FixSQL template install for pip

#14 m-bull closed 6 years ago
0
Versions of additionals tools

#13 ConstantinV closed 6 years ago
2
Feature request: Querying SNP addresses

#12 mgenphl opened 6 years ago
3
warning msg on calculating AD ratio issue

#11 Wang-Jing-NZ closed 6 years ago
1
Propose a fix to the bug leading to PICARDPATH env variable being ignored

#10 andersgs closed 6 years ago
2
Make a release

#9 andersgs closed 6 years ago
1
Which snapperdb.py should i be calling?

#8 jb2cool closed 6 years ago
4
Any advice on PostgreSQL setup, everything i try seems to give me Ident authentication failed

#7 jb2cool closed 6 years ago
10
Strains not added to the database

#6 BertBog closed 6 years ago
4
Who is timdallman and why is his username hard-coded into the install? (Problems creating DB)

#5 jb2cool closed 6 years ago
3
Add number of mixed positions cutoff

#4 timdallman closed 5 years ago
1
Add support for JSON import / export

#3 timdallman closed 5 years ago
1
Provide support to GBK for annotating variants

#2 timdallman closed 7 years ago
0
Auto populate reference in strains_cluster table

#1 timdallman closed 7 years ago
0