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ulelab
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ultraplex
Ultra-fast 5' and 3' demultiplexer
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Update README.md
#54
CharlotteAnne
closed
5 months ago
0
Problem with running Ultraplex
#53
lichen-fungus
opened
6 months ago
1
Could the read name modification be improved?
#52
TomSmithCGAT
opened
7 months ago
5
Ultraplex taking 1TB of RAM and did not yet even start writing out a single nucleotide???
#51
mmokrejs
closed
10 months ago
8
Update __main__.py
#50
Delayed-Gitification
closed
10 months ago
0
change how version is set to be more stable
#49
CharlotteAnne
closed
10 months ago
0
3p barcode only
#48
Delayed-Gitification
closed
11 months ago
0
Ultraplex only recognizes the last 3' barcode
#47
arivers
closed
11 months ago
3
Feat versioning read number log
#46
CharlotteAnne
closed
11 months ago
1
Comaptibility issue with Python3.10
#45
simonpfisterer
opened
1 year ago
1
demultiplexing of dual-indexed, single-end fastq.gz files with index in header
#44
rikrdo89
opened
1 year ago
1
Test Ultraplex on PacBio sequencing data
#43
gooodle
opened
1 year ago
1
ValueError: Cannot have only N wildcards in the sequence
#42
realzhang
opened
1 year ago
0
Demultiplexing indexed plasmid barcode libraries
#41
rahmas36
opened
1 year ago
12
Demultiplexing does not recognize 3' barcode
#40
tiagobrc
opened
1 year ago
5
ultraplex does not remove barcode from the other read (when insert is short); ultraplex destroy read ID
#39
algaebrown
opened
2 years ago
2
Remove barcodes from 3' end only
#38
Vishvak2000
opened
2 years ago
1
Memory explosion
#37
bschilder
opened
2 years ago
4
Using different adapters across samples
#36
bschilder
opened
2 years ago
9
please tag release to be in sync with pipy
#35
EricDeveaud
opened
2 years ago
1
Feature request: Enable option to not adapter trim or quality trim
#34
jpuritz
opened
2 years ago
3
AssertionError: 5' barcodes not consistent
#33
akhst7
closed
2 years ago
7
Make using p7 sequences easier
#32
Delayed-Gitification
opened
2 years ago
0
Support for variable length barcodes would be useful
#31
JHarrisonEcoEvo
opened
2 years ago
6
Error: TypeError: object of type 'NoneType' has no len()
#30
grendon
opened
2 years ago
1
Fix typo in large barcode warning
#29
samirelanduk
closed
3 years ago
0
raise ValueError("Adapter sequence is empty")
#28
antonkulaga
closed
2 years ago
1
Is it support for Novaseq 6000?
#27
hmkim
closed
2 years ago
1
update python version requirement
#26
rpetit3
closed
3 years ago
0
Non dictionary
#25
Delayed-Gitification
closed
3 years ago
0
Fix umi bug
#24
Delayed-Gitification
closed
3 years ago
0
Add a final length filter
#23
CharlotteAnne
closed
3 years ago
0
No cudatapt required
#22
Delayed-Gitification
closed
3 years ago
0
Matched sbatch submission opts to multicore pigz
#21
amchakra
closed
3 years ago
0
renaming does work for ultra/sbatch mode
#20
Delayed-Gitification
closed
2 years ago
1
Paired end
#19
Delayed-Gitification
closed
3 years ago
0
allow naming of samples
#18
Delayed-Gitification
closed
3 years ago
0
Trim 3' adaptor from forward read for paired end
#17
Delayed-Gitification
closed
3 years ago
1
Remove SLURM outputs from sbatch mode
#16
Delayed-Gitification
opened
3 years ago
0
Convert barcodes to upper case and remove spaces
#15
Delayed-Gitification
closed
3 years ago
0
Check that barcodes are not duplicated
#14
Delayed-Gitification
opened
3 years ago
0
Remove comma from end of 3' barcodes if present
#13
Delayed-Gitification
closed
3 years ago
0
Feat log file
#12
CharlotteAnne
closed
3 years ago
0
Even more control
#11
Delayed-Gitification
closed
3 years ago
0
removed useless stuff
#10
Delayed-Gitification
closed
3 years ago
0
Feat gzip tmp
#9
Delayed-Gitification
closed
3 years ago
0
Feat cli arguments
#8
CharlotteAnne
closed
3 years ago
0
Improve write speed
#7
Delayed-Gitification
closed
3 years ago
0
Use dnaio for writing files
#6
Delayed-Gitification
closed
3 years ago
0
Enable demux using only 3' barcodes
#5
Delayed-Gitification
opened
4 years ago
0
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