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umccr
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holmes
BAM fingerprint stack
MIT License
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Bump follow-redirects from 1.15.2 to 1.15.6 in /artifacts/fingerprint-docker-image
#37
dependabot[bot]
opened
6 months ago
0
Feature/change encoding of fingerprints
#36
andrewpatto
closed
7 months ago
0
Bump semver and aws-cdk-lib in /deploy/pipeline
#35
dependabot[bot]
closed
7 months ago
1
Bump urllib3 from 1.26.12 to 1.26.18 in /legacy/rename-to-url-encoded-cli
#34
dependabot[bot]
closed
7 months ago
0
Bump axios from 0.27.2 to 0.28.0 in /artifacts/fingerprint-docker-image
#33
dependabot[bot]
closed
7 months ago
1
Date of sequencing is based on "last modified" which is not necessarily when the sequencing happened
#32
andrewpatto
opened
7 months ago
1
Feature/change encoding of fingerprints
#31
andrewpatto
closed
7 months ago
0
Bump follow-redirects from 1.15.2 to 1.15.4 in /artifacts/fingerprint-docker-image
#30
dependabot[bot]
closed
7 months ago
1
Ability for different thresholds for UR and UU
#29
andrewpatto
opened
10 months ago
1
Removed create of buckets - always needs to be made manually
#28
andrewpatto
closed
10 months ago
0
Stage props separate from passthrough to stack
#27
andrewpatto
closed
10 months ago
0
Ability to compare a fingerprint against reference samples
#26
andrewpatto
closed
7 months ago
1
Changed settings to enable prod deploy for Ocicat release
#25
andrewpatto
closed
10 months ago
1
Bump axios from 0.27.2 to 1.6.0 in /artifacts/fingerprint-docker-image
#24
dependabot[bot]
closed
10 months ago
1
Bump @babel/traverse from 7.21.5 to 7.23.2 in /artifacts/fingerprint-docker-image
#23
dependabot[bot]
closed
10 months ago
1
Removed days
#22
andrewpatto
closed
1 year ago
0
Disable namespace
#21
andrewpatto
closed
1 year ago
0
Slack notifier inbuilt
#20
andrewpatto
closed
1 year ago
1
Return pairs.tsv from CheckStateMachine
#19
alexiswl
closed
1 year ago
2
Feature/report unrelated amounts to
#18
andrewpatto
closed
1 year ago
0
Fixed regression
#17
andrewpatto
closed
1 year ago
0
Feature/better handle large results
#16
andrewpatto
closed
1 year ago
0
Introduced minimum N for matches
#15
andrewpatto
closed
1 year ago
8
Removed possible spot where results were uncessarily being made larger
#14
andrewpatto
closed
1 year ago
1
Expected related wasn't being passed through
#13
andrewpatto
closed
1 year ago
0
E2E tests don't exercise all the functionality
#12
andrewpatto
opened
1 year ago
0
Add "expected relatedness regex"
#11
andrewpatto
closed
1 year ago
0
Fingerprint S3 name encoding produces very long filenames that are problematic once downloaded (for debug etc)
#10
alexiswl
closed
7 months ago
5
Fixes to get e2e working
#9
andrewpatto
closed
1 year ago
1
Feature/multiple sites
#8
andrewpatto
closed
1 year ago
3
Bumped the somalier build - which also meant changing the Docker buil…
#7
andrewpatto
closed
1 year ago
0
Limitations in step state size means we need an extra fan-out stage
#6
andrewpatto
closed
1 year ago
2
Run an all-pairs check against a subset of the fingerprints
#5
andrewpatto
closed
1 year ago
5
Added example script for extracting and checking a bam file
#4
alexiswl
closed
2 years ago
0
Extract steps output is not collated into steps result
#3
andrewpatto
closed
1 year ago
1
Reference data (sites, fasta) should be able to be sourced from GDS
#2
andrewpatto
closed
1 year ago
1
Sourcing BAMs from S3 does not work
#1
andrewpatto
closed
1 year ago
1