univieCUBE deepnog issues

univieCUBE / deepnog

Protein orthologous group assignment with deep learning

BSD 3-Clause "New" or "Revised" License

26 stars 8 forks source link

issues

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Training for ResFinderFG v2.0 db

#58 mtva0001 opened 2 months ago
0
Bump torch from 1.13.1 to 2.2.0 in /requirements

#57 dependabot[bot] opened 3 months ago
0
Bump torch from 1.7.1+cpu to 1.13.1 in /requirements

#56 dependabot[bot] closed 1 year ago
2
Update training.py

#55 alepfu closed 3 years ago
6
Update example.rst

#54 alepfu closed 3 years ago
2
CI Add Linux/MacOS Python3.9 builds

#53 VarIr closed 3 years ago
1
FIX bioconda installs pytorch

#52 VarIr closed 3 years ago
1
MNT prepare release 1.2.3

#51 VarIr closed 3 years ago
1
Fix some warnings

#50 VarIr closed 3 years ago
1
Remove training with iterable datasets?

#49 VarIr opened 3 years ago
1
Fix dropout

#48 VarIr closed 3 years ago
1
FIX Dropout in DeepNOG.forward()

#47 VarIr closed 3 years ago
0
CI Temporarily remove Python 3.9 from github actions

#46 VarIr closed 3 years ago
2
TST iterable training

#45 VarIr closed 3 years ago
1
DeepNOG implementation doesn't use dropout

#44 colligant closed 3 years ago
5
Fix typo - wrong sequence of files used for training

#43 colligant closed 3 years ago
13
Updated license.

#42 saper0 closed 3 years ago
2
FIX Pandas 1.2.0 related test failure

#41 VarIr closed 3 years ago
1
DOC update readme and docs (esp. new models)

#40 VarIr closed 3 years ago
1
Update readme

#39 VarIr closed 3 years ago
1
MNT enable CI for Python 3.9 on Linux and macOS

#38 VarIr closed 3 years ago
1
CI with Python 3.9

#37 VarIr closed 3 years ago
0
Remove Travis CI

#36 VarIr closed 3 years ago
1
Enable codql analysis

#35 VarIr closed 3 years ago
1
CI: Github Actions for Linux and MacOS builds

#34 VarIr closed 3 years ago
1
Switching to other CI providers?

#33 VarIr closed 3 years ago
1
Remove 'deepencoding' architecture

#32 VarIr closed 3 years ago
1
MNT CI builds for Python 3.9

#31 VarIr closed 3 years ago
2
More models

#30 VarIr closed 3 years ago
1
Using COG20 data?

#28 mcbeaker closed 3 years ago
10
BLD fix Travis MacOS Python versions

#27 VarIr closed 4 years ago
1
Adding deepnog to bioconda

#26 VarIr closed 4 years ago
4
Galaxy integration

#25 bgruening opened 4 years ago
1
Add bioconda recipe

#24 VarIr closed 4 years ago
1
Add bioconda recipe

#23 VarIr closed 4 years ago
1
Erroneous packaging in v1.2.0

#22 VarIr closed 4 years ago
0
MNT Exit (not raising) on requesting unavailable device

#21 VarIr closed 4 years ago
1
Progress bar

#20 VarIr closed 4 years ago
1
Number of threads for CPU training

#19 VarIr opened 4 years ago
4
Error handling

#18 VarIr closed 4 years ago
0
Model versioning

#17 VarIr opened 4 years ago
1
Training facilities

#16 VarIr closed 4 years ago
7
BLD install PyTorch 1.5 nightly on Travis Linux

#15 VarIr closed 4 years ago
2
DOC deepnog extension docs

#14 VarIr closed 4 years ago
1
update docs

#13 LokiLuciferase closed 4 years ago
1
CLI changes

#12 LokiLuciferase closed 4 years ago
2
FIX Unrequired module imports (LGTM)

#11 VarIr closed 4 years ago
2
FIX use correct Python version on Travis

#10 VarIr closed 4 years ago
1
MNT move repo to univieCUBE

#9 VarIr closed 4 years ago
1
MNT public repo

#8 VarIr closed 4 years ago
1