issues
search
uparma
/
uparma-lib
Lookup library for all mappers. Format json
3
stars
6
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
add parameters for cellranger mkfastq
#161
valentin-petzold
closed
4 months ago
0
add filter parquet
#160
tristan-ranff
closed
4 months ago
0
remove gating_strategy_notes_txt from parameters.json
#159
valentin-petzold
closed
4 months ago
0
add gating strategy notes to fpreppy style
#158
tristan-ranff
closed
5 months ago
0
fix qc methods default value
#157
valentin-petzold
closed
6 months ago
0
add fpreppy parameters
#156
tristan-ranff
closed
6 months ago
0
Update README.md
#155
fu
closed
7 months ago
0
Feature/add cytocluster params
#154
valentin-petzold
closed
7 months ago
0
fix parameters
#153
valentin-petzold
closed
1 year ago
0
hotfix msfragger 3
#152
tristan-ranff
closed
1 year ago
0
add parameters for codon extension in rp metrics
#151
tristan-ranff
closed
1 year ago
0
Modified and added new parameters!
#150
GregJohnsonJr
closed
1 year ago
1
Created a PyMZML style node
#149
GregJohnsonJr
closed
1 year ago
3
add cds_regex_filter
#148
tristan-ranff
closed
1 year ago
0
readd mapping_column
#147
tristan-ranff
closed
1 year ago
0
Individual styles per DIA-NN wrapper
#146
andy-d-palmer
closed
1 year ago
0
add basic umitools and samtools styles/parameters
#145
tristan-ranff
closed
1 year ago
0
bugfix(diann_style_1): fixed modifications should be called with --fixed-mod parameter
#144
andy-d-palmer
closed
1 year ago
1
Update parameters.json
#143
MKoesters
closed
1 year ago
0
updated parameter name
#142
ArtiVlasov
closed
1 year ago
0
added exp_design_generator_style and mapping column parameter
#141
ArtiVlasov
closed
1 year ago
0
add experiment setup header translations
#140
MKoesters
closed
1 year ago
0
Updates for DIA-NN
#139
andy-d-palmer
closed
1 year ago
0
add tmt_quant_parser parameters
#138
MKoesters
closed
1 year ago
0
added cluster_max_distance param, as eps was declared wrongly
#137
ArtiVlasov
closed
1 year ago
0
Add tmt_quant parameters
#136
MKoesters
closed
1 year ago
0
updated README
#135
ArtiVlasov
closed
1 year ago
0
Diann parameters
#134
ArtiVlasov
closed
1 year ago
0
replace remove ref
#133
tristan-ranff
closed
1 year ago
0
Feature/fastqc
#132
tristan-ranff
closed
1 year ago
0
Feature/renamer remove
#131
tristan-ranff
closed
1 year ago
0
add initial fastqc parameters
#130
tristan-ranff
closed
1 year ago
0
add parameters to cutadapt
#129
tristan-ranff
closed
1 year ago
0
* add pyprotista style back into uparma for down compatibility
#128
ArtiVlasov
closed
1 year ago
0
rename pyprotista to pyiohat
#127
tristan-ranff
closed
1 year ago
0
test ursgal style is contained in all params
#126
tristan-ranff
closed
1 year ago
0
add max_ram
#125
tristan-ranff
closed
1 year ago
0
cds padding
#124
tristan-ranff
closed
1 year ago
0
add rp_style_1 basic parameters
#123
tristan-ranff
closed
1 year ago
0
add missing translation for ptm shepherd style header translations
#122
tristan-ranff
closed
1 year ago
1
add missing translation for ursgal style frag tol unit
#121
tristan-ranff
closed
1 year ago
0
add star index size parameter and allow multiple quant mappings
#120
tristan-ranff
closed
1 year ago
0
Update parameters.json
#119
MKoesters
closed
1 year ago
0
Update parameters.json
#118
MKoesters
closed
1 year ago
0
add `add_unimod_default_file` parameter
#117
MKoesters
closed
1 year ago
0
Flag discussion
#116
tristan-ranff
closed
1 year ago
1
fix bowtie flag keys
#115
tristan-ranff
closed
1 year ago
0
Update/param value translation
#114
ArtiVlasov
closed
1 year ago
0
ofc none is not empty but "-"
#113
tristan-ranff
closed
1 year ago
0
fix capital M
#112
tristan-ranff
closed
1 year ago
0
Next