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urol-e5 / timeseries

Data generated from e5 time series sampling in Moorea
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PI Curve AQY values much higher in TP 4 across all species than other time points #35

Closed AHuffmyer closed 3 years ago

AHuffmyer commented 3 years ago

Timepoint 4 AQY values are much higher than would be expected based on other timepoint data across species (0.02-0.07 as compared to 0.002-0.007). These differences occur both when I use flexible start values and set start values. See attached plots and note the rapid increase in species pi curves that shows the high AQY values. What would be driving these high AQY values but no apparent issues with Rd and Am values? Is this truly representative of the PI curve data or do we have a problem in our code? PI_curves_species_nls.pdf PI_Figure.pdf

AHuffmyer commented 3 years ago

Script with nls equations here: https://github.com/urol-e5/timeseries/blob/master/timepoint_4/scripts/pi_curves_nls.Rmd

AHuffmyer commented 3 years ago

The error was due to incorrect light values in the metadata file - problem fixed!