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uym2
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TreeShrink
Implementation of the TreeShrink problem
https://uym2.github.io/TreeShrink/
GNU General Public License v3.0
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No module named treeshrink.sequence_lib
#43
BioinfoAK
opened
7 months ago
0
Utilize os.path.join instead of concatenation
#42
AshtonPooley
opened
1 year ago
0
IndexError due to double backslash windows directories.
#41
AshtonPooley
opened
1 year ago
0
Compatibility with Python 3.10
#40
V-Z
opened
1 year ago
0
removes taxa on short branches
#39
bmichanderson
opened
1 year ago
3
'treeshrink' is not a package
#38
theo-allnutt-bioinformatics
opened
1 year ago
0
Failed with error in density.default
#37
mesti90
opened
1 year ago
1
about how to apply treeshrink..
#36
Mia1349
closed
1 year ago
2
Failed with error: ‘cannot read workspace version 3 written by R 4.0.3; need R 3.5.0 or newer’
#35
Ofsm
opened
1 year ago
1
Error in running example dataset
#34
FrancisNge
opened
2 years ago
3
run_treeshrink.py fails with python 3.10
#33
nylander
opened
2 years ago
6
What are the criteria for adjusting q？
#32
Dream-sugar
opened
2 years ago
2
V1.3.9
#31
uym2
closed
3 years ago
0
Single gene - delete long branch
#30
Lcornet
opened
3 years ago
1
Subset loci.treefile
#29
herber4
opened
3 years ago
1
Python and R version compatibility
#28
wlhamilton
opened
3 years ago
4
Partitioning by clade
#27
BenKuhnhaeuser
opened
3 years ago
1
Deleting node support values
#26
PeteCowman
opened
3 years ago
0
No support values in output trees
#25
PeteCowman
opened
3 years ago
1
Whitelisting of important taxa
#24
BenKuhnhaeuser
closed
3 years ago
5
v1.3.5
#23
uym2
closed
4 years ago
0
Error linked to the -t flag
#22
baileyp1
closed
4 years ago
1
Can R v4 be used?
#21
baileyp1
opened
4 years ago
3
Allow -o . to write to current directory
#20
tseemann
closed
4 years ago
1
--force option to allow overwrite of -o DIR
#19
tseemann
closed
4 years ago
3
Prevent converstion to scientific form?
#18
tseemann
closed
4 years ago
2
Typo: MINI(M)PACT
#17
tseemann
closed
4 years ago
1
Please add --version
#16
tseemann
closed
4 years ago
1
No parameters vomits rather than prints help?
#15
tseemann
closed
4 years ago
1
Error in rank(x, ties.method = "min", na.last = "keep") : unimplemented type 'list' in 'greater'
#14
adityabandla
opened
4 years ago
6
Specify the name of output in help
#13
smirarab
closed
3 years ago
0
Specify output file name
#12
smirarab
closed
4 years ago
3
Tag versions and releases
#11
omula
closed
4 years ago
1
ZeroDivisionError: float division by zero
#10
bruceamurphy
closed
4 years ago
1
Node label transfer error at rooting point
#9
dfmoralesb
opened
5 years ago
4
Argument issues in examples?
#8
mkweskin
closed
5 years ago
1
parse species name question
#7
andrewalverson
closed
3 years ago
3
treeshrink.py not in directory
#6
mcfaddenlab
closed
5 years ago
5
module not found
#5
bruceamurphy
closed
4 years ago
1
RuntimeError: maximum recursion depth exceeded in cmp
#4
carloliveros
closed
4 years ago
3
Synchronize
#3
uym2
closed
5 years ago
0
Develop
#2
uym2
closed
5 years ago
0
Develop
#1
uym2
closed
6 years ago
0