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vanheeringen-lab
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ANANSE
Prediction of key transcription factors in cell fate determination using enhancer networks. See full ANANSE documentation for detailed installation instructions and usage examples.
http://anansepy.readthedocs.io
MIT License
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The output of ananse network is wried
#218
linfanxiao
closed
5 days ago
1
output also peak region
#217
guandailu
opened
2 months ago
0
ananse network: distributed.core - ERROR - Exception while handling op shuffle_receive
#216
StevenBai97
opened
4 months ago
0
Error using custom PWM
#215
fmarletaz
opened
7 months ago
0
run gets stuck in binding step (anansesnake)
#214
janursa
closed
8 months ago
0
update installation process
#213
siebrenf
closed
11 months ago
1
Develop
#212
siebrenf
closed
11 months ago
0
An error occurred when I use ananse influence with -w
#211
socialtree-yt
opened
11 months ago
5
How to construct a network only focusing on my interesting genes?
#210
socialtree-yt
opened
12 months ago
11
Can I use ananse to compare TFs networks between disease and normal condition such as aging and young ,or fibrosis disease and healthy control?
#209
socialtree-yt
opened
12 months ago
11
Input X contains NaN
#208
Roki12543
opened
12 months ago
4
release v0.5
#207
siebrenf
closed
1 year ago
0
Update README.md (#203)
#206
siebrenf
closed
1 year ago
0
whitelist & cleanup
#205
siebrenf
closed
1 year ago
1
Update README.md
#204
siebrenf
closed
1 year ago
0
Update README.md
#203
JGASmits
closed
1 year ago
0
accept p300 ChIP-seq
#202
siebrenf
opened
1 year ago
1
deterministic binding
#201
siebrenf
closed
1 year ago
0
update docs
#200
siebrenf
closed
1 year ago
0
Usage of ANANSE in single-cell multiomic data
#199
PauBadiaM
opened
1 year ago
3
Update command-line_reference.md
#198
BrancoHeuts
closed
1 year ago
0
Update index.md
#197
BrancoHeuts
closed
1 year ago
0
Update input_data.md
#196
BrancoHeuts
closed
1 year ago
0
"start" or "start_b"
#195
siebrenf
closed
1 year ago
0
accept p300 & too much other stuff
#194
siebrenf
opened
2 years ago
1
length of index
#193
fmarletaz
closed
1 year ago
8
v0.4.1
#192
siebrenf
closed
1 year ago
0
update gimme docs URL
#191
siebrenf
closed
2 years ago
0
Minor tweaks
#190
siebrenf
closed
2 years ago
1
No regions in the binding file overlap with given regions!
#189
liyangyang12
closed
2 years ago
11
minimal scipy version bump
#188
siebrenf
closed
2 years ago
1
dask memory management attempt 2
#187
siebrenf
closed
2 years ago
1
dask memory management
#186
siebrenf
closed
2 years ago
2
Issue with motif2factors before ANANSE
#185
lynnyummy
closed
2 years ago
2
merge
#184
siebrenf
closed
2 years ago
0
Ananse network is not using genomepy annotations or genomes
#183
alexgilgal
closed
2 years ago
3
ANANSE-CAGE Additional Scripts
#182
BrancoHeuts
closed
2 years ago
0
enhancer regions
#181
liyangyang12
closed
2 years ago
4
CAGE support
#180
siebrenf
closed
2 years ago
2
ignore genes annotated on multiple contigs
#179
siebrenf
closed
2 years ago
2
Factor activity
#178
simonvh
closed
2 years ago
1
Update benchmark code
#177
simonvh
closed
1 year ago
1
ANANSE influence - gene overlap
#176
siebrenf
closed
2 years ago
1
Develop-CAGE
#175
BrancoHeuts
closed
2 years ago
1
Fix plot
#174
siebrenf
closed
2 years ago
0
fix getting hdf keys
#173
siebrenf
closed
2 years ago
0
Technical note on target_scores
#172
siebrenf
closed
2 years ago
0
YEASH! O(n^2) BETTER AT LEAST! (and improved as well)
#171
simonvh
closed
2 years ago
1
fix selection of top edges, and simplify code
#170
simonvh
closed
2 years ago
3
YEASH! O(n^2) better AT LEAST!
#169
siebrenf
closed
2 years ago
2
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