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vanheeringen-lab
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seq2science
Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows. Works equally easy with public as local data.
https://vanheeringen-lab.github.io/seq2science
MIT License
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BUG: Authentication plugin 'mysql_native_password' cannot be loaded
#1027
Leif78
opened
4 weeks ago
4
FR: [DEG by Salmon]
#1026
bioinfolabmu
opened
7 months ago
0
Update get_fastq.smk
#1025
Maarten-vd-Sande
closed
8 months ago
0
patch chipseeker env
#1024
Maarten-vd-Sande
closed
8 months ago
0
BUG: chipseeker is broken (again)
#1023
Maarten-vd-Sande
closed
8 months ago
0
Q: [DEG analysis contrast]
#1022
bioinfolabmu
opened
10 months ago
1
Q: [Comparative RNA-Seq analysis]
#1021
bioinfolabmu
opened
10 months ago
2
STAR 2-pass alignment
#1020
siebrenf
opened
10 months ago
1
Combining STAR and Salmon
#1019
siebrenf
opened
10 months ago
5
BUG: [config.yaml error]
#1018
bioinfolabmu
opened
10 months ago
15
BUG: download_fastq report error
#1016
bioinfolabmu
closed
10 months ago
4
Update multiqc.yaml
#1015
Maarten-vd-Sande
closed
10 months ago
1
Sra in tmpdir
#1014
simonvh
closed
11 months ago
0
Update atac_seq.md
#1013
Maarten-vd-Sande
closed
1 year ago
0
Update peak_calling.smk
#1012
Maarten-vd-Sande
closed
1 year ago
0
DESeq2 feedback
#1011
siebrenf
closed
1 year ago
0
QC report2
#1010
siebrenf
closed
1 year ago
0
mamba installation
#1009
Maarten-vd-Sande
closed
1 year ago
0
fix issue when colors in table
#1008
Maarten-vd-Sande
closed
1 year ago
0
Profiles
#1007
Maarten-vd-Sande
closed
1 year ago
0
ENCODE support
#1006
Maarten-vd-Sande
closed
1 year ago
1
Init clarity
#1005
Maarten-vd-Sande
closed
1 year ago
0
bralan3
#1004
Maarten-vd-Sande
closed
1 year ago
0
patch Unknown Data type
#1003
Maarten-vd-Sande
closed
1 year ago
0
greedy by default
#1002
Maarten-vd-Sande
closed
1 year ago
0
fix R from "helping" by removing digits from float column names
#1001
siebrenf
closed
1 year ago
0
new bdgpe assembly version because bdgpe.36 is depecated
#1000
Maarten-vd-Sande
closed
1 year ago
0
Update util.py
#999
Maarten-vd-Sande
closed
1 year ago
0
Update faq.md
#998
srinzema
closed
1 year ago
0
Update combine_biological_reps.py
#997
Maarten-vd-Sande
closed
1 year ago
2
idr requires numpy<1.20
#996
Maarten-vd-Sande
closed
1 year ago
1
BUG: latest numpy version and IDR inconsistency
#995
apposada
closed
1 year ago
1
axolotl needs
#994
Maarten-vd-Sande
closed
1 year ago
0
Update deseq2.R
#993
srinzema
closed
1 year ago
0
Fixed crashing when no differential genes were found
#992
srinzema
closed
1 year ago
0
Update faq.md
#991
jroubroeks
closed
1 year ago
0
Update subread.yaml
#990
Maarten-vd-Sande
closed
1 year ago
0
gimme maelstrom without XDG_CACHE_DIR set
#989
Maarten-vd-Sande
closed
1 year ago
0
simplify & pin sctk requirements
#988
siebrenf
closed
1 year ago
0
workflow explanation by default outputted
#987
Maarten-vd-Sande
closed
1 year ago
0
scRNA defaults work
#986
Maarten-vd-Sande
closed
1 year ago
0
Update CHANGELOG.md
#985
Maarten-vd-Sande
closed
1 year ago
0
better cram support
#984
Maarten-vd-Sande
closed
1 year ago
1
Update gen_dags.py
#983
Maarten-vd-Sande
closed
1 year ago
0
update doc DAGs
#982
siebrenf
closed
1 year ago
0
small text
#981
Maarten-vd-Sande
closed
1 year ago
0
Develop
#980
siebrenf
closed
1 year ago
0
improve deseq2 clusters
#979
siebrenf
closed
1 year ago
0
trackhub_index fix
#978
siebrenf
closed
1 year ago
0
FR: don't crash when no differential genes are found
#977
Maarten-vd-Sande
closed
1 year ago
4
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