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vanvalenlab / deepcell-label

Cloud-based data annotation tools for biological images
https://label.deepcell.org
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annotate-images biology flask image-segmentation javascript python react xstate

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DeepCell Label: Cloud-Based Labeling for Single-Cell Analysis

Build Status Coverage Status Apache 2.0

DeepCell Label is a web-based tool to visualize and label biological images. It can segment an image, assign cells across a timelapse, and track divisions in multiplexed images, 3D image stacks, and time-lapse movies.

As it's available through a browser, DeepCell Label can crowdsource data labeling or review, correct, and curate labels as a domain expert.

The site is built with React, XState, and Flask and runs locally or on the cloud.

Visit label.deepcell.org to create a project from an example file or your own .tiff, .png, or .npz. Dropdown instructions are available while working on a project in DeepCell Label.