tddough98
commented
2 years ago It also seems that mesmer dimension orders put Y before X while the segmentation dimensions put X before Y (i.e. CYX is the order for mesmer, while CXY is the option in the segmentation dropdown).
I'm not sure if this is being improperly ignored and resulting in unexpected rotations, or if there's a difference in dimension order convention happening.
As mentioned in #201, both the mesmer and segmentation pipelines support flexible dimension ordering in slightly different ways. For mesmer, we get the dimension order from the redis consumer, and for segmentation, we select the dimension order from a dropdown menu.
When we add dimension order options for more models, we should standardize and generalize the approach to recording and forwarding the dimension order to DeepCell Label so that results can be properly loaded and visualized.