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varfish-org
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mehari
VEP-like tool for sequence ontology and HGVS annotation of VCF files
MIT License
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fix: make server genes/tx return empty page on missing gene (#385)
#387
holtgrewe
closed
4 months ago
0
Add message to server tx query result in case of issues
#386
holtgrewe
opened
4 months ago
0
Server /genes/txs should not return HTTP 500 on missing gene
#385
holtgrewe
closed
4 months ago
0
fix: warn on missing transcripts rather than failing (#380)
#384
holtgrewe
closed
4 months ago
0
Mehari needs better handling of transcripts without stop codon in CDS, e.g., NM_001291324
#383
holtgrewe
opened
4 months ago
3
fix: miniscule fix to example URL output
#382
holtgrewe
closed
4 months ago
1
Missing mitochondrial transcripts
#381
holtgrewe
closed
4 months ago
3
Mehari resolves HGNC ID to tx but tx missing
#380
holtgrewe
closed
4 months ago
0
chore(main): release 0.24.2
#379
varfish-bot
closed
4 months ago
2
feat: report MANE transcript counts in "db create"
#378
holtgrewe
closed
4 months ago
1
build(deps): bump actions/add-to-project from 0.5.0 to 0.6.0
#377
dependabot[bot]
closed
4 months ago
1
build(deps): bump clap-verbosity-flag from 2.1.2 to 2.2.0
#376
dependabot[bot]
closed
4 months ago
3
build(deps): bump serde_json from 1.0.113 to 1.0.114
#375
dependabot[bot]
closed
4 months ago
3
build(deps): bump serde from 1.0.196 to 1.0.197
#374
dependabot[bot]
closed
4 months ago
3
build(deps): bump the noodles group with 2 updates
#373
dependabot[bot]
closed
4 months ago
5
chore(main): release 0.24.1
#372
varfish-bot
closed
4 months ago
1
chore: cleanup test db bootstrapping (#370)
#371
holtgrewe
closed
4 months ago
1
Cleanup test db bootstrapping
#370
holtgrewe
closed
4 months ago
0
chore(main): release 0.24.0
#369
varfish-bot
closed
4 months ago
2
feat: adding "mehari db subset" command (#367)
#368
holtgrewe
closed
4 months ago
0
Implement command to create subset of database
#367
holtgrewe
closed
4 months ago
0
chore(main): release 0.23.2
#366
varfish-bot
closed
4 months ago
1
fix: handling missing FORMAT/AD values (".")
#365
holtgrewe
closed
4 months ago
0
chore(main): release 0.23.1
#364
varfish-bot
closed
4 months ago
2
fix: work around issue with glnexus #362
#363
holtgrewe
closed
4 months ago
0
Work around glnexus issue
#362
holtgrewe
closed
4 months ago
0
feat: script fix_glnexus.py prepare GLNexus output for noodles (#356)
#361
holtgrewe
closed
4 months ago
0
Revert "ci: removing "add to project GitHub actions" (#355)"
#360
holtgrewe
closed
4 months ago
0
chore(main): release 0.23.0
#359
varfish-bot
closed
4 months ago
2
feat: adding support for Sniffles2 (#357)
#358
holtgrewe
closed
4 months ago
0
Annotation of merged Sniffles 2 VCF files does not work.
#357
holtgrewe
closed
4 months ago
0
Annotation of GLNexus-merged Clair3 data does not work
#356
holtgrewe
closed
4 months ago
1
ci: removing "add to project GitHub actions"
#355
holtgrewe
closed
4 months ago
0
build(deps): bump serde_yaml from 0.9.31 to 0.9.32
#354
dependabot[bot]
closed
4 months ago
1
build(deps): bump clap from 4.4.18 to 4.5.1
#353
dependabot[bot]
closed
4 months ago
1
build(deps): bump insta from 1.34.0 to 1.35.1
#352
dependabot[bot]
closed
4 months ago
1
build(deps): bump env_logger from 0.11.1 to 0.11.2
#351
dependabot[bot]
closed
4 months ago
1
build(deps): bump anyhow from 1.0.79 to 1.0.80
#350
dependabot[bot]
closed
4 months ago
1
build(deps): bump actions/checkout from 2 to 4
#349
dependabot[bot]
closed
4 months ago
1
build(deps): bump codecov/codecov-action from 3 to 4
#348
dependabot[bot]
closed
4 months ago
0
build(deps): bump docker/metadata-action from 4 to 5
#347
dependabot[bot]
closed
4 months ago
1
build(deps): bump derive_builder from 0.13.0 to 0.13.1
#346
dependabot[bot]
closed
4 months ago
1
build(deps): bump indexmap from 2.2.2 to 2.2.3
#345
dependabot[bot]
closed
4 months ago
1
build(deps): bump serde_with from 3.6.0 to 3.6.1
#344
dependabot[bot]
closed
4 months ago
1
build(deps): bump indicatif from 0.17.7 to 0.17.8
#343
dependabot[bot]
closed
4 months ago
1
build(deps): bump chrono from 0.4.33 to 0.4.34
#342
dependabot[bot]
closed
4 months ago
1
chore(main): release 0.22.0
#341
varfish-bot
closed
5 months ago
2
feat: adding /genes/txs endpoint for server (#339)
#340
holtgrewe
closed
5 months ago
1
Add server endpoint for serving a gene's transcripts
#339
holtgrewe
closed
5 months ago
0
build(deps): bump actix-web from 4.4.1 to 4.5.1
#338
dependabot[bot]
closed
5 months ago
1
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