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varfish-org
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mehari
VEP-like tool for sequence ontology and HGVS annotation of VCF files
MIT License
14
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build(deps): bump the noodles group with 6 updates
#432
dependabot[bot]
closed
2 months ago
1
build(deps): bump h2 from 0.3.24 to 0.3.26
#431
dependabot[bot]
closed
3 months ago
0
Profile mehari
#430
xiamaz
opened
3 months ago
6
build(deps): bump the noodles group with 6 updates
#429
dependabot[bot]
closed
2 months ago
1
build(deps): bump codecov/codecov-action from 3 to 4
#428
dependabot[bot]
closed
1 month ago
0
build(deps): bump actions/add-to-project from 0.6.0 to 1.0.0
#427
dependabot[bot]
closed
3 months ago
0
Annotation plugin support
#426
xiamaz
opened
3 months ago
7
Create a feature comparison matrix for mehari
#425
xiamaz
opened
3 months ago
2
Support multi-allelic VCF
#424
xiamaz
closed
1 month ago
2
Make ped file optional for annotation
#423
xiamaz
closed
2 weeks ago
1
benchmark mehari
#422
xiamaz
closed
3 months ago
6
ci: Introduce build caching
#421
xiamaz
closed
3 months ago
1
ci: Fix tarpaulin failing on full test
#420
xiamaz
closed
3 months ago
3
Fix test coverage CI
#419
xiamaz
closed
3 months ago
1
chore: Remove dangling file
#418
xiamaz
closed
3 months ago
1
Brackets missing in HGVS Protein description
#417
stolpeo
opened
3 months ago
1
chore(main): release 0.25.5
#416
varfish-bot
closed
2 months ago
2
build(deps): bump clap from 4.5.1 to 4.5.4
#415
dependabot[bot]
closed
1 month ago
0
build(deps): bump actions/add-to-project from 0.6.0 to 0.6.1
#414
dependabot[bot]
closed
3 months ago
1
fix: actually produce one tsv record per gene+annotations
#413
tedil
closed
3 months ago
2
Factor V Leiden Mutation missing because of Transcript liftover
#412
einicke
opened
3 months ago
0
build(deps): bump clap from 4.5.1 to 4.5.3
#411
dependabot[bot]
closed
3 months ago
1
build(deps): bump the noodles group with 6 updates
#410
dependabot[bot]
closed
3 months ago
1
Wrong transcript effect produced for BRCA2 variant
#409
xiamaz
closed
3 months ago
0
Genome builds have no unified format
#408
gromdimon
opened
3 months ago
3
build(deps): bump env_logger from 0.11.2 to 0.11.3
#407
dependabot[bot]
closed
1 month ago
0
build(deps): bump strum from 0.26.1 to 0.26.2
#406
dependabot[bot]
closed
1 month ago
0
build(deps): bump clap from 4.5.1 to 4.5.2
#405
dependabot[bot]
closed
3 months ago
1
build(deps): bump derive_builder from 0.13.1 to 0.20.0
#404
dependabot[bot]
closed
1 month ago
0
build(deps): bump the noodles group with 1 update
#403
dependabot[bot]
closed
3 months ago
1
chore(main): release 0.25.4
#402
varfish-bot
closed
3 months ago
2
fix: stop codon issue for Ensembl chrMT transcripts
#401
holtgrewe
closed
3 months ago
1
chore(main): release 0.25.3
#400
varfish-bot
closed
4 months ago
1
fix: variants on chrX and chrY were erroneously ignored
#399
holtgrewe
closed
4 months ago
0
chore(main): release 0.25.2
#398
varfish-bot
closed
4 months ago
1
fix: strucvars/csq should not double-HGNC prefix gene IDs
#397
holtgrewe
closed
4 months ago
0
chore(main): release 0.25.1
#396
varfish-bot
closed
4 months ago
2
fix: move assertion on chrMT transcripts
#395
holtgrewe
closed
4 months ago
1
chore(main): release 0.25.0
#394
varfish-bot
closed
4 months ago
2
feat: enable using ENSEMBL chrMT transcript (#381)
#393
holtgrewe
closed
4 months ago
1
Follow-up for missing RNA genes on chrMT
#392
holtgrewe
opened
4 months ago
0
build(deps): bump mio from 0.8.10 to 0.8.11
#391
dependabot[bot]
closed
4 months ago
0
chore: bump hgvs-rs to 0.16.0
#390
holtgrewe
closed
4 months ago
1
build(deps): bump insta from 1.35.1 to 1.36.1
#389
dependabot[bot]
closed
4 months ago
0
build(deps): bump the noodles group with 2 updates
#388
dependabot[bot]
closed
4 months ago
0
fix: make server genes/tx return empty page on missing gene (#385)
#387
holtgrewe
closed
4 months ago
0
Add message to server tx query result in case of issues
#386
holtgrewe
opened
4 months ago
0
Server /genes/txs should not return HTTP 500 on missing gene
#385
holtgrewe
closed
4 months ago
0
fix: warn on missing transcripts rather than failing (#380)
#384
holtgrewe
closed
4 months ago
0
Mehari needs better handling of transcripts without stop codon in CDS, e.g., NM_001291324
#383
holtgrewe
opened
4 months ago
3
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