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varfish-org
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varfish-db-downloader
Download public databases for VarFish
MIT License
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feat: write manifest files to output (#92)
#99
holtgrewe
closed
4 months ago
0
fix: fixing typo in genes.spec.yaml
#98
holtgrewe
closed
4 months ago
0
fix: copy over spec.yaml to reduced datasets
#97
holtgrewe
closed
4 months ago
0
Trim down large gnomad RocksDB databases
#96
holtgrewe
opened
4 months ago
0
fix: adjust to upstream data changes
#95
holtgrewe
closed
4 months ago
1
feat: bump gnomAD to v4.1 (#93)
#94
holtgrewe
closed
5 months ago
0
Bump gnomAD to v4.1
#93
holtgrewe
closed
5 months ago
0
Write MANIFEST.txt files
#92
holtgrewe
closed
4 months ago
0
fix: make DECIPHER HI import work again (#90)
#91
holtgrewe
closed
8 months ago
0
DECIPHER HI score is empty
#90
holtgrewe
closed
8 months ago
1
feat: add gnomAD SV/CNV v4 support
#89
holtgrewe
closed
5 months ago
1
gnomAD v4 SVs not available as worker input
#88
holtgrewe
closed
8 months ago
0
chore: common .github files
#87
holtgrewe
closed
10 months ago
0
fix: removing duplicates in conditions JSONL
#86
holtgrewe
closed
10 months ago
1
feat: replace orphapacket by orphadata API access (#84)
#85
holtgrewe
closed
10 months ago
1
Replace OrphaPacket by ORDO CSV
#84
holtgrewe
closed
10 months ago
0
feat: retrieve downloader version via cli
#83
holtgrewe
closed
10 months ago
0
feat: bump annonars to 0.33.0
#82
holtgrewe
closed
10 months ago
1
feat: bump dbvar to 20231030
#81
holtgrewe
closed
10 months ago
0
feat: integrating PanelApp download for annonars (#79)
#80
holtgrewe
closed
10 months ago
1
Integrate PanelApp data
#79
holtgrewe
closed
10 months ago
0
feat: upgrade dbNSFP to v4.5 (#77)
#78
holtgrewe
closed
10 months ago
0
Upgrade dbNSFP to v4.5
#77
holtgrewe
closed
10 months ago
0
ci: allow manual check urls trigger
#76
holtgrewe
closed
11 months ago
0
feat: integrating gnomAD v4
#75
holtgrewe
closed
11 months ago
2
Integrate AlphaMissense Scores
#74
holtgrewe
closed
10 months ago
0
Integrate gnomAD v4 frequencies
#73
holtgrewe
closed
10 months ago
1
Integrate gnomAD v4 gene constraints
#72
holtgrewe
closed
10 months ago
0
fix: adjusting to GTEx upstream URL change
#71
holtgrewe
closed
11 months ago
0
chore: bumping mehari and annonars versions
#70
holtgrewe
closed
11 months ago
2
feat: adding DECIPHER HI to annonars genes
#69
holtgrewe
closed
1 year ago
1
feat: adding annonars functional
#68
holtgrewe
closed
1 year ago
1
feat: build annonars regions (clingen dosage)
#67
holtgrewe
closed
1 year ago
1
feat: import of gnomAD SV data into RocksDB
#66
holtgrewe
closed
1 year ago
1
feat: updating annonars genes with ClinGen dosage & DOMINO
#65
holtgrewe
closed
1 year ago
1
feat: version bump of mehari and transcripts
#64
holtgrewe
closed
1 year ago
0
feat: add DECIPHER HI predictions v3
#63
holtgrewe
closed
1 year ago
0
feat: download of ClinGen dosage sensitivity
#62
holtgrewe
closed
1 year ago
0
feat: download of ClinGen dosage sensitivity
#61
holtgrewe
closed
1 year ago
0
feat: adding AlphaMissense scores
#60
holtgrewe
closed
10 months ago
1
feat: importing GTex data into annonars genes database
#59
holtgrewe
closed
1 year ago
0
feat: annotating with Orphanet diseases
#58
holtgrewe
closed
1 year ago
1
feat: annotation of genes with OMIM diseases
#57
holtgrewe
closed
1 year ago
0
feat: adding pHaplo, pTriplo, sHet as seen in DECIPHER
#56
holtgrewe
closed
1 year ago
0
feat: adding clingen curation data
#55
holtgrewe
closed
1 year ago
1
chore: bumping versions of dependencies
#54
holtgrewe
closed
1 year ago
0
feat: provide enrichment probesets for Agilent/IDT/Twist (#52)
#53
holtgrewe
closed
1 year ago
0
Provide enrichment kits / probe sets from UCSC
#52
holtgrewe
closed
1 year ago
1
feat: adding files for varfish-server-worker (#50)
#51
holtgrewe
closed
1 year ago
2
Build worker files
#50
holtgrewe
closed
1 year ago
0
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