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vari-bbc
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demultiplex
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updates to AVITI script
#23
VAIgenomics
opened
3 months ago
2
Fix trimming conditional when there's no values in Description.
#22
dfbautista
closed
10 months ago
0
Miniseq and requests
#21
dfbautista
closed
10 months ago
0
email genomics when script completes
#20
VAIgenomics
opened
1 year ago
0
New MiniSeq instrument to takeover iSeq dmux branch.
#19
VAIgenomics
opened
1 year ago
0
Slurm and trimming
#18
dfbautista
closed
1 year ago
0
Additional files to ./diagnostic_files directory
#17
VAIgenomics
opened
1 year ago
0
Changes for iSeq process
#16
VAIgenomics
opened
2 years ago
2
New Node Configuration
#15
VAIgenomics
closed
3 years ago
4
adding a new feature: A md5sum for all of the L000 files.
#14
joowkim
closed
3 years ago
2
iSeq won't demultiplex
#13
VAIgenomics
closed
3 years ago
2
cellranger compatibility with nextseq instrument
#12
VAIgenomics
closed
3 years ago
3
overrepresented barcodes by lane
#11
VAIgenomics
closed
3 years ago
12
Skip fastqc multiqc for undetermined
#10
joowkim
closed
3 years ago
0
Find low count fqs
#9
genomics-kl
closed
3 years ago
1
FastQC/multiQC not needed for Undetermined files
#8
VAIgenomics
closed
3 years ago
4
Process empty fastqs
#7
genomics-kl
closed
3 years ago
0
Allow bcl2fastq rule and rest of pipeline to handle samples without any reads
#6
genomics-kl
closed
3 years ago
3
Snakemake-fied pipeline; parallel fastQC and fastqScreen
#5
genomics-kl
closed
3 years ago
0
FastQC and FastQscreen run serially per sample
#4
genomics-kl
closed
3 years ago
2
Added fastq_screen to bcl2fastq.sh.
#3
genomics-kl
closed
4 years ago
0
Make output files and job stdout stderr files group-readable
#2
genomics-kl
closed
3 years ago
0
Add a script to remove all the added files from a failed dmux run
#1
genomics-kl
closed
3 years ago
0