vari-bbc demultiplex issues

vari-bbc / demultiplex

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updates to AVITI script

#23 VAIgenomics opened 3 months ago
1
Fix trimming conditional when there's no values in Description.

#22 dfbautista closed 9 months ago
0
Miniseq and requests

#21 dfbautista closed 9 months ago
0
email genomics when script completes

#20 VAIgenomics opened 1 year ago
0
New MiniSeq instrument to takeover iSeq dmux branch.

#19 VAIgenomics opened 1 year ago
0
Slurm and trimming

#18 dfbautista closed 1 year ago
0
Additional files to ./diagnostic_files directory

#17 VAIgenomics opened 1 year ago
0
Changes for iSeq process

#16 VAIgenomics opened 2 years ago
2
New Node Configuration

#15 VAIgenomics closed 3 years ago
4
adding a new feature: A md5sum for all of the L000 files.

#14 joowkim closed 3 years ago
2
iSeq won't demultiplex

#13 VAIgenomics closed 3 years ago
2
cellranger compatibility with nextseq instrument

#12 VAIgenomics closed 3 years ago
3
overrepresented barcodes by lane

#11 VAIgenomics closed 3 years ago
12
Skip fastqc multiqc for undetermined

#10 joowkim closed 3 years ago
0
Find low count fqs

#9 genomics-kl closed 3 years ago
1
FastQC/multiQC not needed for Undetermined files

#8 VAIgenomics closed 3 years ago
4
Process empty fastqs

#7 genomics-kl closed 3 years ago
0
Allow bcl2fastq rule and rest of pipeline to handle samples without any reads

#6 genomics-kl closed 3 years ago
3
Snakemake-fied pipeline; parallel fastQC and fastqScreen

#5 genomics-kl closed 3 years ago
0
FastQC and FastQscreen run serially per sample

#4 genomics-kl closed 3 years ago
2
Added fastq_screen to bcl2fastq.sh.

#3 genomics-kl closed 4 years ago
0
Make output files and job stdout stderr files group-readable

#2 genomics-kl closed 3 years ago
0
Add a script to remove all the added files from a failed dmux run

#1 genomics-kl closed 3 years ago
0