Accompanying datasets and analyses for Evolutionary genomics: statistical and computational methods, Ch. Evolution of viral genomes: interplay between selection, recombination and other forces.
datasets/ contains all datasets used in the main body of the book chapter analyses. results/ contains all markdown output and JSON files generated from HyPhy analysis of data in datasets/exercises/ contains datasets and expected results for book chapter exercisesfigures/ contain figures used in book chapter manuscriptpreparation/ contains files, scripts, raw data to generate HIV1, H3, and PB2 datasets for analysesPlease direct any questions to stephanie.spielman@temple.edu or spond@temple.edu.