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veg
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hivclustering
Infer molecular transmission networks from pairwise distance files (part of HIV-TRACE)
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Schema-Based Node Keying for Attribute Matching
#48
stevenweaver
opened
6 days ago
0
Adding --min-cluster-size
#47
spond
closed
4 months ago
0
List of Cluster sizes in json file do not match with cluster IDs in the List of Nodes.
#46
MikePone
opened
9 months ago
0
where can I find the file "tests/incremental/original.csv"?
#45
liamxg
opened
10 months ago
2
refactor: improve importability
#44
FynnFreyer
opened
1 year ago
0
Unittests fail on master
#43
FynnFreyer
opened
1 year ago
0
Feature Request/Improvement: Better usability through enabling easier imports and argument passing
#42
FynnFreyer
opened
1 year ago
0
fix(mtnetwork): add import check
#41
FynnFreyer
closed
10 months ago
0
Import Error running `hivnetworkcsv`
#40
FynnFreyer
opened
1 year ago
1
Numbers of clusters are different between "Network Summary" and "Nodes"
#39
yuri9689
opened
1 year ago
1
AUTO-TUNE fixes
#38
stevenweaver
closed
1 year ago
0
Inconsistent schema
#37
stevenweaver
closed
1 year ago
1
subcluster
#36
lwxing
opened
3 years ago
9
Problems with hivnetworkannotate
#35
Omnipotent32
opened
4 years ago
3
changing singletons flag behavior
#34
stevenweaver
closed
4 years ago
0
Quiet mode
#33
stevenweaver
closed
4 years ago
0
Quiet mode
#32
stevenweaver
closed
4 years ago
0
Develop
#31
spond
closed
4 years ago
1
fix condition where nid is not in cluster_remap
#30
stevenweaver
closed
4 years ago
0
hivannotate
#29
stevenweaver
closed
4 years ago
0
master sync
#28
stevenweaver
closed
4 years ago
0
fixing an oopsie
#27
stevenweaver
closed
4 years ago
0
restoring compatability patch with hivtrace web application
#26
stevenweaver
closed
4 years ago
0
v1.5
#25
spond
closed
4 years ago
0
Reintroducing changes
#24
spond
closed
5 years ago
2
Merge pull request #22 from veg/master
#23
stevenweaver
closed
5 years ago
0
sync master to develop
#22
stevenweaver
closed
5 years ago
0
Allow consumption of tsv TN93 file.
#21
stevenweaver
opened
5 years ago
0
can this automatically install independence of HyPhy?
#20
ghost
opened
5 years ago
9
dependency and version bump
#19
stevenweaver
closed
5 years ago
0
hivclustering 1.3.1 breaks hivtrace-viz
#18
stevenweaver
closed
5 years ago
0
Ensure output is deterministic
#17
stevenweaver
closed
6 years ago
1
Sort output json data.
#16
davebx
closed
6 years ago
2
Add new "delimiter" argument
#15
stevenweaver
closed
1 year ago
3
Can now supply multiple CSV and sequence files as input, making inclu…
#14
spond
closed
6 years ago
1
Adding missing support for the -o (singletons) option
#13
spond
closed
7 years ago
0
updating BioExt dependency to 0.18.0 or greater
#12
stevenweaver
closed
7 years ago
0
Adding an interactive procedure to filtering triangles
#11
spond
closed
8 years ago
0
Installation errors
#10
slevu
closed
6 years ago
6
Contaminant flag overrides cluster filter flag.
#9
stevenweaver
closed
9 years ago
0
Add README information for TNS
#8
stevenweaver
closed
6 years ago
0
Minor fixes
#7
spond
closed
9 years ago
0
Adding TNS to scripts to be installed and updating settings to settin…
#6
spond
closed
9 years ago
0
removing accidental list comprehension
#5
stevenweaver
closed
9 years ago
0
edge filtering and test fixes
#4
stevenweaver
closed
9 years ago
0
adjusting python3 network path
#3
stevenweaver
closed
9 years ago
0
Bug when no edges are filtered.
#2
spond
closed
9 years ago
1
Merging SLKP changes
#1
spond
closed
9 years ago
0