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veit / jupyter-tutorial

Training materials for setting up and using a research infrastructure based on Jupyter notebooks: https://cusy.io/en/seminars
https://jupyter-tutorial.readthedocs.io/
BSD 3-Clause "New" or "Revised" License
23 stars 12 forks source link

Scheduled weekly dependency update for week 01 #181

Closed pyup-bot closed 1 year ago

pyup-bot commented 1 year ago

Update charset-normalizer from 2.1.1 to 3.0.1.

The bot wasn't able to find a changelog for this release. Got an idea?

Links - PyPI: https://pypi.org/project/charset-normalizer - Repo: https://github.com/Ousret/charset_normalizer

Update importlib-metadata from 5.2.0 to 6.0.0.

The bot wasn't able to find a changelog for this release. Got an idea?

Links - PyPI: https://pypi.org/project/importlib-metadata - Changelog: https://pyup.io/changelogs/importlib-metadata/ - Repo: https://github.com/python/importlib_metadata

Update importlib-resources from 5.10.1 to 5.10.2.

Changelog ### 5.10.2 ``` ======= * 274: Prefer ``write_bytes`` to context manager as proposed in gh-100586. ```
Links - PyPI: https://pypi.org/project/importlib-resources - Changelog: https://pyup.io/changelogs/importlib-resources/ - Repo: https://github.com/python/importlib_resources

Update ipykernel from 6.19.4 to 6.20.0.

Changelog ### 6.20.0 ``` ([Full Changelog](https://github.com/ipython/ipykernel/compare/v6.19.4...fbea757e117c1d3b0da29a40b4abcf3133a310f4)) Enhancements made - ENH: add `%gui` support for Qt6 [1054](https://github.com/ipython/ipykernel/pull/1054) ([shaperilio](https://github.com/shaperilio)) Maintenance and upkeep improvements - Add more ci checks [1063](https://github.com/ipython/ipykernel/pull/1063) ([blink1073](https://github.com/blink1073)) Contributors to this release ([GitHub contributors page for this release](https://github.com/ipython/ipykernel/graphs/contributors?from=2022-12-20&to=2022-12-26&type=c)) [blink1073](https://github.com/search?q=repo%3Aipython%2Fipykernel+involves%3Ablink1073+updated%3A2022-12-20..2022-12-26&type=Issues) | [shaperilio](https://github.com/search?q=repo%3Aipython%2Fipykernel+involves%3Ashaperilio+updated%3A2022-12-20..2022-12-26&type=Issues) <!-- <END NEW CHANGELOG ENTRY> --> ```
Links - PyPI: https://pypi.org/project/ipykernel - Changelog: https://pyup.io/changelogs/ipykernel/

Update jupyter-core from 5.1.1 to 5.1.2.

Changelog ### 5.1.2 ``` ([Full Changelog](https://github.com/jupyter/jupyter_core/compare/v5.1.1...4bd8ba97c99fefc416fe43411f935d40e2b7e441)) Maintenance and upkeep improvements - Add spell check and ensure docstrings [327](https://github.com/jupyter/jupyter_core/pull/327) ([blink1073](https://github.com/blink1073)) - Maint: Some more precise typing. [326](https://github.com/jupyter/jupyter_core/pull/326) ([Carreau](https://github.com/Carreau)) Documentation improvements - Add api docs [328](https://github.com/jupyter/jupyter_core/pull/328) ([blink1073](https://github.com/blink1073)) Contributors to this release ([GitHub contributors page for this release](https://github.com/jupyter/jupyter_core/graphs/contributors?from=2022-12-22&to=2023-01-02&type=c)) [blink1073](https://github.com/search?q=repo%3Ajupyter%2Fjupyter_core+involves%3Ablink1073+updated%3A2022-12-22..2023-01-02&type=Issues) | [Carreau](https://github.com/search?q=repo%3Ajupyter%2Fjupyter_core+involves%3ACarreau+updated%3A2022-12-22..2023-01-02&type=Issues) <!-- <END NEW CHANGELOG ENTRY> --> ```
Links - PyPI: https://pypi.org/project/jupyter-core - Changelog: https://pyup.io/changelogs/jupyter-core/

Update nbsphinx from 0.8.10 to 0.8.11.

Changelog ### 0.8.11 ``` __ https://github.com/spatialaudio/nbsphinx/compare/0.8.10...0.8.11 ```
Links - PyPI: https://pypi.org/project/nbsphinx - Changelog: https://pyup.io/changelogs/nbsphinx/ - Docs: https://nbsphinx.readthedocs.io/

Update Pillow from 9.3.0 to 9.4.0.

Changelog ### 9.4.0 ``` ------------------ - Fixed null pointer dereference crash with malformed font 6846 [wiredfool, radarhere] - Return from ImagingFill early if image has a zero dimension 6842 [radarhere] - Reversed deprecations for Image constants, except for duplicate Resampling attributes 6830 [radarhere] - Improve exception traceback readability 6836 [hugovk, radarhere] - Do not attempt to read IFD1 if absent 6840 [radarhere] - Fixed writing int as ASCII tag 6800 [radarhere] - If available, use wl-paste or xclip for grabclipboard() on Linux 6783 [radarhere] - Added signed option when saving JPEG2000 images 6709 [radarhere] - Patch OpenJPEG to include ARM64 fix 6718 [radarhere] - Added support for I;16 modes in putdata() 6825 [radarhere] - Added conversion from RGBa to RGB 6708 [radarhere] - Added DDS support for uncompressed L and LA images 6820 [radarhere, REDxEYE] - Added LightSource tag values to ExifTags 6749 [radarhere] - Fixed PyAccess after changing ICO size 6821 [radarhere] - Do not use EXIF from info when saving PNG images 6819 [radarhere] - Fixed saving EXIF data to MPO 6817 [radarhere] - Added Exif hide_offsets() 6762 [radarhere] - Only compare to previous frame when checking for duplicate GIF frames while saving 6787 [radarhere] - Always initialize all plugins in registered_extensions() 6811 [radarhere] - Ignore non-opaque WebP background when saving as GIF 6792 [radarhere] - Only set tile in ImageFile __setstate__ 6793 [radarhere] - When reading BLP, do not trust JPEG decoder to determine image is CMYK 6767 [radarhere] - Added IFD enum to ExifTags 6748 [radarhere] - Fixed bug combining GIF frame durations 6779 [radarhere] - Support saving JPEG comments 6774 [smason, radarhere] - Added getxmp() to WebPImagePlugin 6758 [radarhere] - Added "exact" option when saving WebP 6747 [ashafaei, radarhere] - Use fractional coordinates when drawing text 6722 [radarhere] - Fixed writing int as BYTE tag 6740 [radarhere] - Added MP Format Version when saving MPO 6735 [radarhere] - Added Interop to ExifTags 6724 [radarhere] - CVE-2007-4559 patch when building on Windows 6704 [TrellixVulnTeam, nulano, radarhere] - Fix compiler warning: accessing 64 bytes in a region of size 48 6714 [wiredfool] - Use verbose flag for pip install 6713 [wiredfool, radarhere] ```
Links - PyPI: https://pypi.org/project/pillow - Changelog: https://pyup.io/changelogs/pillow/ - Homepage: https://python-pillow.org

Update platformdirs from 2.6.0 to 2.6.2.

Changelog ### 2.6.2 ``` ------------------------------- - Fix missing ``typing-extensions`` dependency. ``` ### 2.6.1 ``` ------------------------------- - Add detection of ``$PREFIX`` for android. ```
Links - PyPI: https://pypi.org/project/platformdirs - Changelog: https://pyup.io/changelogs/platformdirs/

Update Pygments from 2.13.0 to 2.14.0.

Changelog ### 2.14.0 ``` -------------- (released January 1st, 2023) - Added lexers: * Arturo (2259) * GAP session (2211) * Fift (2249) * func (2232) * Jsonnet (2239) * Minecraft schema (2276) * MIPS (2228) * Phix (2222) * Portugol (2300) * TL-b (2247) * World of Warcraft TOC format (2244, 2245) * Wren (2271) - Updated lexers: * Abap: Update keywords (2281) * Alloy: Update for Alloy 6 (1963) * C family (C, C++ and many others): - Fix an issue where a chunk would be wrongly recognized as a function definition due to braces in comments (2210) - Improve parantheses handling for function definitions (2207, 2208) * C: Fix number and operator recognition (2256, 2257) * CSound: Updated builtins (2268) * F: Add ``.fsx`` file extension (2282) * gas (GNU assembler): recognize braces as punctuation (2230) * HTTP: Add `CONNECT` keyword (2242) * Inform 6: Fix lexing of properties and doubles (2214) * INI: Allow comments that are not their own line (2217, 2161) * Java properties: Fix issue with whitespace-delimited keys, support comments starting with `!` and escapes, no longer support undocumented `;` and `//` comments (2241) * LilyPond: Improve heuristics, add ``\maxima`` duration (2283) * LLVM: Add opaque pointer type (2269) * Macaulay2: Update keywords (2305) * Minecraft-related lexers (SNB and Minecraft function) moved to ``pygments.lexers.minecraft`` (2276) * Nim: General improvements (1970) * Nix: Fix single quotes inside indented strings (2289) * Objective J: Fix catastrophic backtracking (2225) * NASM: Add support for SSE/AVX/AVX-512 registers as well as 'rel' and 'abs' address operators (2212) * Powershell: - Add ``local:`` keyword (2254) - Allow continuations without markers (2262, 2263) * Solidity: Add boolean operators (2292) * Spice: Add ``enum`` keyword and fix a bug regarding binary, hexadecimal and octal number tokens (2227) * YAML: Accept colons in key names (2277) - Fix `make mapfiles` when Pygments is not installed in editable mode (2223) - Support more filetypes and compression types in `autopygmentize` (2219) - Merge consecutive tokens in Autohotkey, Clay (2248) - Add ``.nasm`` as a recognized file type for NASM (2280) - Add ``*Spec.hs`` as a recognized file type for ``HSpec`` (2308) - Add ``*.pyi`` (for typing stub files) as a recognized file type for Python (2331) - The HTML lexer no longer emits empty spans for whitespace (2304) - Fix ``IRCFormatter`` inserting linenumbers incorrectly (2270) ```
Links - PyPI: https://pypi.org/project/pygments - Changelog: https://pyup.io/changelogs/pygments/ - Homepage: https://pygments.org/

Update pyrsistent from 0.19.2 to 0.19.3.

Changelog ### 0.19.3 ``` * Fix 264, add wheels and official support for Python 3.11. Thanks hugovk for this! ```
Links - PyPI: https://pypi.org/project/pyrsistent - Changelog: https://pyup.io/changelogs/pyrsistent/ - Repo: https://github.com/tobgu/pyrsistent/

Update sphinx from 5.3.0 to 6.0.0.

Changelog ### 6.0.0 ``` ===================================== Dependencies ------------ * 10468: Drop Python 3.6 support * 10470: Drop Python 3.7, Docutils 0.14, Docutils 0.15, Docutils 0.16, and Docutils 0.17 support. Patch by Adam Turner Incompatible changes -------------------- * 7405: Removed the jQuery and underscore.js JavaScript frameworks. These frameworks are no longer be automatically injected into themes from Sphinx 6.0. If you develop a theme or extension that uses the ``jQuery``, ``$``, or ``$u`` global objects, you need to update your JavaScript to modern standards, or use the mitigation below. The first option is to use the sphinxcontrib.jquery_ extension, which has been developed by the Sphinx team and contributors. To use this, add ``sphinxcontrib.jquery`` to the ``extensions`` list in ``conf.py``, or call ``app.setup_extension("sphinxcontrib.jquery")`` if you develop a Sphinx theme or extension. The second option is to manually ensure that the frameworks are present. To re-add jQuery and underscore.js, you will need to copy ``jquery.js`` and ``underscore.js`` from `the Sphinx repository`_ to your ``static`` directory, and add the following to your ``layout.html``: .. code-block:: html+jinja {%- block scripts %} <script src="{{ pathto('_static/jquery.js', resource=True) }}"></script> <script src="{{ pathto('_static/underscore.js', resource=True) }}"></script> {{ super() }} {%- endblock %} .. _sphinxcontrib.jquery: https://github.com/sphinx-contrib/jquery/ Patch by Adam Turner. * 10471, 10565: Removed deprecated APIs scheduled for removal in Sphinx 6.0. See :ref:`dev-deprecated-apis` for details. Patch by Adam Turner. * 10901: C Domain: Remove support for parsing pre-v3 style type directives and roles. Also remove associated configuration variables ``c_allow_pre_v3`` and ``c_warn_on_allowed_pre_v3``. Patch by Adam Turner. Features added -------------- * 10924: LaTeX: adopt better looking defaults for tables and code-blocks. See :confval:`latex_table_style` and the ``pre_border-radius`` and ``pre_background-TeXcolor`` :ref:`additionalcss` for the former defaults and how to re-enact them if desired. Bugs fixed ---------- * 10984: LaTeX: Document :confval:`latex_additional_files` behavior for files with ``.tex`` extension. ```
Links - PyPI: https://pypi.org/project/sphinx - Changelog: https://pyup.io/changelogs/sphinx/