veit / jupyter-tutorial

Training materials for setting up and using a research infrastructure based on Jupyter notebooks: https://cusy.io/en/seminars
https://jupyter-tutorial.readthedocs.io/
BSD 3-Clause "New" or "Revised" License
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ipython ipython-widget ipywidget jupyter jupyter-notebook jupyterhub notebook

Quick start

.. _badges:

Status

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.. _first-steps:

Installation

. Download and unpack:

.. code-block:: console

$ curl -O https://codeload.github.com/veit/jupyter-tutorial/zip/main
$ unzip main
Archive:  main
…
   creating: jupyter-tutorial-main/
…

. Install Python packages:

.. code-block:: console

  $ cd jupyter-tutorial-main
  $ python3 -m venv .venv
  $ . .venv/bin/activate
  $ python -m pip install --upgrade pip
  $ python -m pip install -e ".[dev]"

. Install the `Jupyter Notebook Extensions

https://jupyter-contrib-nbextensions.readthedocs.io/`_ Javascript and CSS files:

.. code-block:: console

$ jupyter contrib nbextension install --user
jupyter contrib nbextension install --user
Installing jupyter_contrib_nbextensions nbextension files to jupyter data directory
…
Successfully installed jupyter-contrib-core-0.3.3 jupyter-contrib-nbextensions-0.5.1
jupyter-highlight-selected-word-0.2.0 jupyter-latex-envs-1.4.6
jupyter-nbextensions-configurator-0.4.1
…
$ jupyter nbextension enable latex_envs --user --py
Enabling notebook extension latex_envs/latex_envs...
      - Validating: OK

. Create HTML documentation:

Note that pandoc has to be installed. On Debian/Ubuntu you can just run

.. code-block:: console

$  sudo apt install pandoc

To create the HTML documentation run these commands:

.. code-block:: console

$ cd docs/
$ make html

. Create a PDF:

For the creation of a PDF file you need additional packages.

For Debian/Ubuntu you get them with the following command:

.. code-block:: console

$ sudo apt install texlive-latex-recommended texlive-latex-extra texlive-fonts-recommended latexmk

or for macOS with:

.. code-block:: console

$ brew cask install mactex
…
🍺  mactex was successfully installed!
$ curl --remote-name https://www.tug.org/fonts/getnonfreefonts/install-getnonfreefonts
$ sudo texlua install-getnonfreefonts
…
mktexlsr: Updating /usr/local/texlive/2020/texmf-dist/ls-R...
mktexlsr: Done.

Then you can generate a PDF with:

.. code-block:: console

$ make latexpdf
…
The LaTeX files are in _build/latex.
Run 'make' in that directory to run these through (pdf)latex
…

You can find the PDF at docs/_build/latex/jupytertutorial.pdf.

. Run Vale to check spelling

You can install download cusy-vale with:

.. code-block:: console

  $ vale sync
  Syncing cusy-vale [1/1] ██████████████████████████████████████████████ 100% | 0s
   SUCCESS  Synced 1 package(s) to '/Users/veit/cusy/trn/jupyter-tutorial/styles'.

.. seealso::

.. _follow-us:

Follow us

Pull-Requests

If you have suggestions for improvements and additions, I recommend that you create a Fork <https://github.com/veit/jupyter-tutorial/fork> of my GitHub Repository <https://github.com/veit/jupyter-tutorial/> and make your changes there. . You are also welcome to make a pull request. If the changes contained therein are small and atomic, I’ll be happy to look at your suggestions.