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veit / jupyter-tutorial

Training materials for setting up and using a research infrastructure based on Jupyter notebooks: https://cusy.io/en/seminars
https://jupyter-tutorial.readthedocs.io/
BSD 3-Clause "New" or "Revised" License
23 stars 12 forks source link

Scheduled weekly dependency update for week 18 #196

Closed pyup-bot closed 1 year ago

pyup-bot commented 1 year ago

Update ipython from 8.12.0 to 8.13.1.

The bot wasn't able to find a changelog for this release. Got an idea?

Links - PyPI: https://pypi.org/project/ipython - Changelog: https://pyup.io/changelogs/ipython/ - Homepage: https://ipython.org

Update nbclient from 0.7.3 to 0.7.4.

The bot wasn't able to find a changelog for this release. Got an idea?

Links - PyPI: https://pypi.org/project/nbclient

Update platformdirs from 3.2.0 to 3.5.0.

Changelog ### 3.5.0 ``` ------------------------------- - introduce ``user_music_dir`` ``` ### 3.4.0 ``` ------------------------------- - introduce ``user_videos_dir`` ``` ### 3.3.0 ``` ------------------------------- - introduce ``user_pictures_dir`` ```
Links - PyPI: https://pypi.org/project/platformdirs - Changelog: https://pyup.io/changelogs/platformdirs/

Update requests from 2.28.2 to 2.29.0.

Changelog ### 2.29.0 ``` ------------------- **Improvements** - Requests now defers chunked requests to the urllib3 implementation to improve standardization. (6226) - Requests relaxes header component requirements to support bytes/str subclasses. (6356) ```
Links - PyPI: https://pypi.org/project/requests - Changelog: https://pyup.io/changelogs/requests/ - Docs: https://requests.readthedocs.io

Update Sphinx from 6.2.0 to 7.0.0.

Changelog ### 7.0.0 ``` ===================================== Incompatible changes -------------------- * 11359: Remove long-deprecated aliases for ``MecabSplitter`` and ``DefaultSplitter`` in ``sphinx.search.ja``. * 11360: Remove deprecated ``make_old_id`` functions in domain object description classes. * 11363: Remove the Setuptools integration (``build_sphinx`` hook in ``setup.py``). * 11364: Remove deprecated ``sphinx.ext.napoleon.iterators`` module. * 11365: Remove support for the ``jsdump`` format in ``sphinx.search``. * 11366: Make ``locale`` a required argument to ``sphinx.util.i18n.format_date()``. * 11370: Remove deprecated ``sphinx.util.stemmer`` module. * 11371: Remove deprecated ``sphinx.pycode.ast.parse()`` function. * 11372: Remove deprecated ``sphinx.io.read_doc()`` function. * 11373: Removed deprecated ``sphinx.util.get_matching_files()`` function. * 11378: Remove deprecated ``sphinx.util.docutils.is_html5_writer_available()`` function. * 11379: Make the ``env`` argument to ``Builder`` subclasses required. * 11380: autosummary: Always emit grouped import exceptions. * 11381: Remove deprecated ``style`` key for HTML templates. * 11382: Remove deprecated ``sphinx.writers.latex.LaTeXTranslator.docclasses`` attribute. * 11383: Remove deprecated ``sphinx.builders.html.html5_ready`` and ``sphinx.builders.html.HTMLTranslator`` attributes. * 11385: Remove support for HTML 4 output. ``` ### 6.2.1 ``` ===================================== Bugs fixed ---------- * 11355: Revert the default type of :confval:`nitpick_ignore` and :confval:`nitpick_ignore_regex` to ``list``. ```
Links - PyPI: https://pypi.org/project/sphinx - Changelog: https://pyup.io/changelogs/sphinx/

Update urllib3 from 1.26.15 to 2.0.1.

Changelog ### 2.0.1 ``` ================== Fixes ----- - Fixed a socket leak when fingerprint or hostname verifications fail. (`2991 <https://github.com/urllib3/urllib3/issues/2991>`__) - Fixed an error when ``HTTPResponse.read(0)`` was the first ``read`` call or when the internal response body buffer was otherwise empty. (`2998 <https://github.com/urllib3/urllib3/issues/2998>`__) ``` ### 2.0.0 ``` ================== Read the `v2.0 migration guide <https://urllib3.readthedocs.io/en/latest/v2-migration-guide.html>`__ for help upgrading to the latest version of urllib3. Removed ------- * Removed support for Python 2.7, 3.5, and 3.6 (`883 <https://github.com/urllib3/urllib3/issues/883>`__, `#2336 <https://github.com/urllib3/urllib3/issues/2336>`__). * Removed fallback on certificate ``commonName`` in ``match_hostname()`` function. This behavior was deprecated in May 2000 in RFC 2818. Instead only ``subjectAltName`` is used to verify the hostname by default. To enable verifying the hostname against ``commonName`` use ``SSLContext.hostname_checks_common_name = True`` (`2113 <https://github.com/urllib3/urllib3/issues/2113>`__). * Removed support for Python with an ``ssl`` module compiled with LibreSSL, CiscoSSL, wolfSSL, and all other OpenSSL alternatives. Python is moving to require OpenSSL with PEP 644 (`2168 <https://github.com/urllib3/urllib3/issues/2168>`__). * Removed support for OpenSSL versions earlier than 1.1.1 or that don't have SNI support. When an incompatible OpenSSL version is detected an ``ImportError`` is raised (`2168 <https://github.com/urllib3/urllib3/issues/2168>`__). * Removed the list of default ciphers for OpenSSL 1.1.1+ and SecureTransport as their own defaults are already secure (`2082 <https://github.com/urllib3/urllib3/issues/2082>`__). * Removed ``urllib3.contrib.appengine.AppEngineManager`` and support for Google App Engine Standard Environment (`2044 <https://github.com/urllib3/urllib3/issues/2044>`__). * Removed deprecated ``Retry`` options ``method_whitelist``, ``DEFAULT_REDIRECT_HEADERS_BLACKLIST`` (`2086 <https://github.com/urllib3/urllib3/issues/2086>`__). * Removed ``urllib3.HTTPResponse.from_httplib`` (`2648 <https://github.com/urllib3/urllib3/issues/2648>`__). * Removed default value of ``None`` for the ``request_context`` parameter of ``urllib3.PoolManager.connection_from_pool_key``. This change should have no effect on users as the default value of ``None`` was an invalid option and was never used (`1897 <https://github.com/urllib3/urllib3/issues/1897>`__). * Removed the ``urllib3.request`` module. ``urllib3.request.RequestMethods`` has been made a private API. This change was made to ensure that ``from urllib3 import request`` imported the top-level ``request()`` function instead of the ``urllib3.request`` module (`2269 <https://github.com/urllib3/urllib3/issues/2269>`__). * Removed support for SSLv3.0 from the ``urllib3.contrib.pyopenssl`` even when support is available from the compiled OpenSSL library (`2233 <https://github.com/urllib3/urllib3/issues/2233>`__). * Removed the deprecated ``urllib3.contrib.ntlmpool`` module (`2339 <https://github.com/urllib3/urllib3/issues/2339>`__). * Removed ``DEFAULT_CIPHERS``, ``HAS_SNI``, ``USE_DEFAULT_SSLCONTEXT_CIPHERS``, from the private module ``urllib3.util.ssl_`` (`2168 <https://github.com/urllib3/urllib3/issues/2168>`__). * Removed ``urllib3.exceptions.SNIMissingWarning`` (`2168 <https://github.com/urllib3/urllib3/issues/2168>`__). * Removed the ``_prepare_conn`` method from ``HTTPConnectionPool``. Previously this was only used to call ``HTTPSConnection.set_cert()`` by ``HTTPSConnectionPool`` (`1985 <https://github.com/urllib3/urllib3/issues/1985>`__). * Removed ``tls_in_tls_required`` property from ``HTTPSConnection``. This is now determined from the ``scheme`` parameter in ``HTTPConnection.set_tunnel()`` (`1985 <https://github.com/urllib3/urllib3/issues/1985>`__). Deprecated ---------- * Deprecated ``HTTPResponse.getheaders()`` and ``HTTPResponse.getheader()`` which will be removed in urllib3 v2.1.0. Instead use ``HTTPResponse.headers`` and ``HTTPResponse.headers.get(name, default)``. (`1543 <https://github.com/urllib3/urllib3/issues/1543>`__, `#2814 <https://github.com/urllib3/urllib3/issues/2814>`__). * Deprecated ``urllib3.contrib.pyopenssl`` module which will be removed in urllib3 v2.1.0 (`2691 <https://github.com/urllib3/urllib3/issues/2691>`__). * Deprecated ``urllib3.contrib.securetransport`` module which will be removed in urllib3 v2.1.0 (`2692 <https://github.com/urllib3/urllib3/issues/2692>`__). * Deprecated ``ssl_version`` option in favor of ``ssl_minimum_version``. ``ssl_version`` will be removed in urllib3 v2.1.0 (`2110 <https://github.com/urllib3/urllib3/issues/2110>`__). * Deprecated the ``strict`` parameter as it's not longer needed in Python 3.x. It will be removed in urllib3 v2.1.0 (`2267 <https://github.com/urllib3/urllib3/issues/2267>`__) * Deprecated the ``NewConnectionError.pool`` attribute which will be removed in urllib3 v2.1.0 (`2271 <https://github.com/urllib3/urllib3/issues/2271>`__). * Deprecated ``format_header_param_html5`` and ``format_header_param`` in favor of ``format_multipart_header_param`` (`2257 <https://github.com/urllib3/urllib3/issues/2257>`__). * Deprecated ``RequestField.header_formatter`` parameter which will be removed in urllib3 v2.1.0 (`2257 <https://github.com/urllib3/urllib3/issues/2257>`__). * Deprecated ``HTTPSConnection.set_cert()`` method. Instead pass parameters to the ``HTTPSConnection`` constructor (`1985 <https://github.com/urllib3/urllib3/issues/1985>`__). * Deprecated ``HTTPConnection.request_chunked()`` method which will be removed in urllib3 v2.1.0. Instead pass ``chunked=True`` to ``HTTPConnection.request()`` (`1985 <https://github.com/urllib3/urllib3/issues/1985>`__). Added ----- * Added top-level ``urllib3.request`` function which uses a preconfigured module-global ``PoolManager`` instance (`2150 <https://github.com/urllib3/urllib3/issues/2150>`__). * Added the ``json`` parameter to ``urllib3.request()``, ``PoolManager.request()``, and ``ConnectionPool.request()`` methods to send JSON bodies in requests. Using this parameter will set the header ``Content-Type: application/json`` if ``Content-Type`` isn't already defined. Added support for parsing JSON response bodies with ``HTTPResponse.json()`` method (`2243 <https://github.com/urllib3/urllib3/issues/2243>`__). * Added type hints to the ``urllib3`` module (`1897 <https://github.com/urllib3/urllib3/issues/1897>`__). * Added ``ssl_minimum_version`` and ``ssl_maximum_version`` options which set ``SSLContext.minimum_version`` and ``SSLContext.maximum_version`` (`2110 <https://github.com/urllib3/urllib3/issues/2110>`__). * Added support for Zstandard (RFC 8878) when ``zstandard`` 1.18.0 or later is installed. Added the ``zstd`` extra which installs the ``zstandard`` package (`1992 <https://github.com/urllib3/urllib3/issues/1992>`__). * Added ``urllib3.response.BaseHTTPResponse`` class. All future response classes will be subclasses of ``BaseHTTPResponse`` (`2083 <https://github.com/urllib3/urllib3/issues/2083>`__). * Added ``FullPoolError`` which is raised when ``PoolManager(block=True)`` and a connection is returned to a full pool (`2197 <https://github.com/urllib3/urllib3/issues/2197>`__). * Added ``HTTPHeaderDict`` to the top-level ``urllib3`` namespace (`2216 <https://github.com/urllib3/urllib3/issues/2216>`__). * Added support for configuring header merging behavior with HTTPHeaderDict When using a ``HTTPHeaderDict`` to provide headers for a request, by default duplicate header values will be repeated. But if ``combine=True`` is passed into a call to ``HTTPHeaderDict.add``, then the added header value will be merged in with an existing value into a comma-separated list (``X-My-Header: foo, bar``) (`2242 <https://github.com/urllib3/urllib3/issues/2242>`__). * Added ``NameResolutionError`` exception when a DNS error occurs (`2305 <https://github.com/urllib3/urllib3/issues/2305>`__). * Added ``proxy_assert_hostname`` and ``proxy_assert_fingerprint`` kwargs to ``ProxyManager`` (`2409 <https://github.com/urllib3/urllib3/issues/2409>`__). * Added a configurable ``backoff_max`` parameter to the ``Retry`` class. If a custom ``backoff_max`` is provided to the ``Retry`` class, it will replace the ``Retry.DEFAULT_BACKOFF_MAX`` (`2494 <https://github.com/urllib3/urllib3/issues/2494>`__). * Added the ``authority`` property to the Url class as per RFC 3986 3.2. This property should be used in place of ``netloc`` for users who want to include the userinfo (auth) component of the URI (`2520 <https://github.com/urllib3/urllib3/issues/2520>`__). * Added the ``scheme`` parameter to ``HTTPConnection.set_tunnel`` to configure the scheme of the origin being tunnelled to (`1985 <https://github.com/urllib3/urllib3/issues/1985>`__). * Added the ``is_closed``, ``is_connected`` and ``has_connected_to_proxy`` properties to ``HTTPConnection`` (`1985 <https://github.com/urllib3/urllib3/issues/1985>`__). * Added optional ``backoff_jitter`` parameter to ``Retry``. (`2952 <https://github.com/urllib3/urllib3/issues/2952>`__) Changed ------- * Changed ``urllib3.response.HTTPResponse.read`` to respect the semantics of ``io.BufferedIOBase`` regardless of compression. Specifically, this method: * Only returns an empty bytes object to indicate EOF (that is, the response has been fully consumed). * Never returns more bytes than requested. * Can issue any number of system calls: zero, one or multiple. If you want each ``urllib3.response.HTTPResponse.read`` call to issue a single system call, you need to disable decompression by setting ``decode_content=False`` (`2128 <https://github.com/urllib3/urllib3/issues/2128>`__). * Changed ``urllib3.HTTPConnection.getresponse`` to return an instance of ``urllib3.HTTPResponse`` instead of ``http.client.HTTPResponse`` (`2648 <https://github.com/urllib3/urllib3/issues/2648>`__). * Changed ``ssl_version`` to instead set the corresponding ``SSLContext.minimum_version`` and ``SSLContext.maximum_version`` values. Regardless of ``ssl_version`` passed ``SSLContext`` objects are now constructed using ``ssl.PROTOCOL_TLS_CLIENT`` (`2110 <https://github.com/urllib3/urllib3/issues/2110>`__). * Changed default ``SSLContext.minimum_version`` to be ``TLSVersion.TLSv1_2`` in line with Python 3.10 (`2373 <https://github.com/urllib3/urllib3/issues/2373>`__). * Changed ``ProxyError`` to wrap any connection error (timeout, TLS, DNS) that occurs when connecting to the proxy (`2482 <https://github.com/urllib3/urllib3/pull/2482>`__). * Changed ``urllib3.util.create_urllib3_context`` to not override the system cipher suites with a default value. The new default will be cipher suites configured by the operating system (`2168 <https://github.com/urllib3/urllib3/issues/2168>`__). * Changed ``multipart/form-data`` header parameter formatting matches the WHATWG HTML Standard as of 2021-06-10. Control characters in filenames are no longer percent encoded (`2257 <https://github.com/urllib3/urllib3/issues/2257>`__). * Changed the error raised when connecting via HTTPS when the ``ssl`` module isn't available from ``SSLError`` to ``ImportError`` (`2589 <https://github.com/urllib3/urllib3/issues/2589>`__). * Changed ``HTTPConnection.request()`` to always use lowercase chunk boundaries when sending requests with ``Transfer-Encoding: chunked`` (`2515 <https://github.com/urllib3/urllib3/issues/2515>`__). * Changed ``enforce_content_length`` default to True, preventing silent data loss when reading streamed responses (`2514 <https://github.com/urllib3/urllib3/issues/2514>`__). * Changed internal implementation of ``HTTPHeaderDict`` to use ``dict`` instead of ``collections.OrderedDict`` for better performance (`2080 <https://github.com/urllib3/urllib3/issues/2080>`__). * Changed the ``urllib3.contrib.pyopenssl`` module to wrap ``OpenSSL.SSL.Error`` with ``ssl.SSLError`` in ``PyOpenSSLContext.load_cert_chain`` (`2628 <https://github.com/urllib3/urllib3/issues/2628>`__). * Changed usage of the deprecated ``socket.error`` to ``OSError`` (`2120 <https://github.com/urllib3/urllib3/issues/2120>`__). * Changed all parameters in the ``HTTPConnection`` and ``HTTPSConnection`` constructors to be keyword-only except ``host`` and ``port`` (`1985 <https://github.com/urllib3/urllib3/issues/1985>`__). * Changed ``HTTPConnection.getresponse()`` to set the socket timeout from ``HTTPConnection.timeout`` value before reading data from the socket. This previously was done manually by the ``HTTPConnectionPool`` calling ``HTTPConnection.sock.settimeout(...)`` (`1985 <https://github.com/urllib3/urllib3/issues/1985>`__). * Changed the ``_proxy_host`` property to ``_tunnel_host`` in ``HTTPConnectionPool`` to more closely match how the property is used (value in ``HTTPConnection.set_tunnel()``) (`1985 <https://github.com/urllib3/urllib3/issues/1985>`__). * Changed name of ``Retry.BACK0FF_MAX`` to be ``Retry.DEFAULT_BACKOFF_MAX``. * Changed TLS handshakes to use ``SSLContext.check_hostname`` when possible (`2452 <https://github.com/urllib3/urllib3/pull/2452>`__). * Changed ``server_hostname`` to behave like other parameters only used by ``HTTPSConnectionPool`` (`2537 <https://github.com/urllib3/urllib3/pull/2537>`__). * Changed the default ``blocksize`` to 16KB to match OpenSSL's default read amounts (`2348 <https://github.com/urllib3/urllib3/pull/2348>`__). * Changed ``HTTPResponse.read()`` to raise an error when calling with ``decode_content=False`` after using ``decode_content=True`` to prevent data loss (`2800 <https://github.com/urllib3/urllib3/issues/2800>`__). Fixed ----- * Fixed thread-safety issue where accessing a ``PoolManager`` with many distinct origins would cause connection pools to be closed while requests are in progress (`1252 <https://github.com/urllib3/urllib3/issues/1252>`__). * Fixed an issue where an ``HTTPConnection`` instance would erroneously reuse the socket read timeout value from reading the previous response instead of a newly configured connect timeout. Instead now if ``HTTPConnection.timeout`` is updated before sending the next request the new timeout value will be used (`2645 <https://github.com/urllib3/urllib3/issues/2645>`__). * Fixed ``socket.error.errno`` when raised from pyOpenSSL's ``OpenSSL.SSL.SysCallError`` (`2118 <https://github.com/urllib3/urllib3/issues/2118>`__). * Fixed the default value of ``HTTPSConnection.socket_options`` to match ``HTTPConnection`` (`2213 <https://github.com/urllib3/urllib3/issues/2213>`__). * Fixed a bug where ``headers`` would be modified by the ``remove_headers_on_redirect`` feature (`2272 <https://github.com/urllib3/urllib3/issues/2272>`__). * Fixed a reference cycle bug in ``urllib3.util.connection.create_connection()`` (`2277 <https://github.com/urllib3/urllib3/issues/2277>`__). * Fixed a socket leak if ``HTTPConnection.connect()`` fails (`2571 <https://github.com/urllib3/urllib3/pull/2571>`__). * Fixed ``urllib3.contrib.pyopenssl.WrappedSocket`` and ``urllib3.contrib.securetransport.WrappedSocket`` close methods (`2970 <https://github.com/urllib3/urllib3/issues/2970>`__) ```
Links - PyPI: https://pypi.org/project/urllib3 - Changelog: https://pyup.io/changelogs/urllib3/
pyup-bot commented 1 year ago

Closing this in favor of #197