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veit / jupyter-tutorial

Training materials for setting up and using a research infrastructure based on Jupyter notebooks: https://cusy.io/en/seminars
https://jupyter-tutorial.readthedocs.io/
BSD 3-Clause "New" or "Revised" License
23 stars 12 forks source link

Scheduled weekly dependency update for week 45 #217

Closed pyup-bot closed 12 months ago

pyup-bot commented 1 year ago

Update asttokens from 2.4.0 to 2.4.1.

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Links - PyPI: https://pypi.org/project/asttokens - Repo: https://github.com/gristlabs/asttokens

Update Babel from 2.13.0 to 2.13.1.

Changelog ### 2.13.1 ``` -------------- This is a patch release to fix a few bugs. Fixes ~~~~~ * Fix a typo in ``_locales_to_names`` by Dl84 in :gh:`1038` (issue :gh:`1037`) * Fix ``setuptools`` dependency for Python 3.12 by opryprin in :gh:`1033` ```
Links - PyPI: https://pypi.org/project/babel - Changelog: https://data.safetycli.com/changelogs/babel/ - Homepage: https://babel.pocoo.org/ - Docs: https://pythonhosted.org/Babel/

Update charset-normalizer from 3.3.0 to 3.3.2.

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Links - PyPI: https://pypi.org/project/charset-normalizer - Repo: https://github.com/Ousret/charset_normalizer

Update comm from 0.1.4 to 0.2.0.

Changelog ### 0.2.0 ``` ([Full Changelog](https://github.com/ipython/comm/compare/v0.1.4...5e4ad3166b80feba3f74ad074b7b5f98d7a99439)) Maintenance and upkeep improvements - Add downstream checks [20](https://github.com/ipython/comm/pull/20) ([blink1073](https://github.com/blink1073)) - Adopt sp-repo-review [19](https://github.com/ipython/comm/pull/19) ([blink1073](https://github.com/blink1073)) Other merged PRs - Bump actions/checkout from 3 to 4 [17](https://github.com/ipython/comm/pull/17) ([dependabot](https://github.com/dependabot)) Contributors to this release ([GitHub contributors page for this release](https://github.com/ipython/comm/graphs/contributors?from=2023-08-02&to=2023-11-06&type=c)) [blink1073](https://github.com/search?q=repo%3Aipython%2Fcomm+involves%3Ablink1073+updated%3A2023-08-02..2023-11-06&type=Issues) | [dependabot](https://github.com/search?q=repo%3Aipython%2Fcomm+involves%3Adependabot+updated%3A2023-08-02..2023-11-06&type=Issues) <!-- <END NEW CHANGELOG ENTRY> --> ```
Links - PyPI: https://pypi.org/project/comm - Changelog: https://data.safetycli.com/changelogs/comm/

Update contourpy from 1.1.1 to 1.2.0.

Changelog ### 1.2.0 ``` ContourPy 1.2.0 is a significant release with a number of new features. There is a new format for contour lines called `LineType.ChunkCombinedNan` that is designed to work directly with Bokeh and HoloViews. There are also new functions for manipulating contour lines and filled contours (`convert_filled`, `convert_lines`, `dechunk_filled` and `dechunk_lines`). Calling `ContourGenerator.filled()` with two identical levels now raises a `ValueError` whereas previously it gave different results depending on algorithm `name`. This release supports Python 3.9 to 3.12, and is the first release to ship musllinux aarch64 wheels. Enhancements: - Support strings as well as enums in renderer functions (284) - Add new functions `dechunk_filled` and `dechunk_lines` (290) - Add new functions `convert_filled` and `convert_lines` (291, 293, 294, 312, 313) - Add new `LineType.ChunkCombinedNan` (296, 301, 308) - Raise if call `filled()` with `lower_level==upper_level` (317) Code improvements: - Code quality improvements (282, 310) - Improvements to array checking functions (298) - Better use of dtypes and casting when calling numpy functions (300, 306, 308, 314) - Update type annotations for Matplotlib 3.8 (303) - Extra validation when dechunking and converting contour lines and filled contours (316) Documentation improvements: - Use `versionadded` sphinx directive (285) - Remove threaded experimental warnings (297) - Extract benchmark ratios when generating benchmark plots (302) - Document new functions and conversion to Shapely geometries (318) Build, testing and CI improvements: - Add new CI run using NumPy nightly wheels (280) - Test contour levels that are `+/-np.inf` (283) - Improved PyPy CI (287, 307) - Use better names for enums when reporting parametrised tests (292) - Improved mpl debug renderer tests (295) - Support musllinux aarch64 (305) - Run test suite in parallel (311) - Miscellaneous build and CI improvements (279, 281, 288, 315, 319) ```
Links - PyPI: https://pypi.org/project/contourpy - Changelog: https://data.safetycli.com/changelogs/contourpy/

Update executing from 2.0.0 to 2.0.1.

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Links - PyPI: https://pypi.org/project/executing - Changelog: https://data.safetycli.com/changelogs/executing/ - Repo: https://github.com/alexmojaki/executing

Update fonttools from 4.43.1 to 4.44.0.

Changelog ### 4.44.0 ``` ---------------------------- - [instancer] Recalc OS/2 AvgCharWidth after instancing if default changes (3317). - [otlLib] Make ClassDefBuilder class order match varLib.merger's, i.e. large classes first, then glyph lexicographic order (3321, 3324). - [instancer] Allow not specifying any of min:default:max values and let be filled up with fvar's values (3322, 3323). - [instancer] When running --update-name-table ignore axes that have no STAT axis values (3318, 3319). - [Debg] When dumping to ttx, write the embedded JSON as multi-line string with indentation (92cbfee0d). - [varStore] Handle > 65535 items per encoding by splitting VarData subtable (3310). - [subset] Handle null-offsets in MarkLigPos subtables. - [subset] Keep East Asian spacing fatures vhal, halt, chws, vchw by default (3305). - [instancer.solver] Fixed case where axisDef < lower and upper < axisMax (3304). - [glyf] Speed up compilation, mostly around ``recalcBounds`` (3301). - [varLib.interpolatable] Speed it up when working on variable fonts, plus various micro-optimizations (3300). - Require unicodedata2 >= 15.1.0 when installed with 'unicode' extra, contains UCD 15.1. ```
Links - PyPI: https://pypi.org/project/fonttools - Changelog: https://data.safetycli.com/changelogs/fonttools/ - Repo: http://github.com/fonttools/fonttools

Update ipython from 8.16.1 to 8.17.2.

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Links - PyPI: https://pypi.org/project/ipython - Changelog: https://data.safetycli.com/changelogs/ipython/ - Homepage: https://ipython.org

Update jsonschema from 4.19.1 to 4.19.2.

Changelog ### 4.19.2 ``` ======= * Fix the error message for additional items when used with heterogeneous arrays. * Don't leak the ``additionalItems`` keyword into JSON Schema draft 2020-12, where it was replaced by ``items``. ```
Links - PyPI: https://pypi.org/project/jsonschema - Changelog: https://data.safetycli.com/changelogs/jsonschema/

Update jupyter_client from 8.4.0 to 8.6.0.

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Links - PyPI: https://pypi.org/project/jupyter-client

Update jupyter_core from 5.4.0 to 5.5.0.

Changelog ### 5.5.0 ``` ([Full Changelog](https://github.com/jupyter/jupyter_core/compare/v5.4.0...df0e9e709ebe208df799ec08030b7d7eb15c9cf9)) Maintenance and upkeep improvements - Fix typing for traitlets 5.13 [372](https://github.com/jupyter/jupyter_core/pull/372) ([blink1073](https://github.com/blink1073)) - Adopt pydata sphinx theme [371](https://github.com/jupyter/jupyter_core/pull/371) ([blink1073](https://github.com/blink1073)) - Use ruff format [370](https://github.com/jupyter/jupyter_core/pull/370) ([blink1073](https://github.com/blink1073)) - Update typings for mypy 1.6 [368](https://github.com/jupyter/jupyter_core/pull/368) ([blink1073](https://github.com/blink1073)) - Lowercase APPNAME on macOS Homebrew [364](https://github.com/jupyter/jupyter_core/pull/364) ([singingwolfboy](https://github.com/singingwolfboy)) Contributors to this release ([GitHub contributors page for this release](https://github.com/jupyter/jupyter_core/graphs/contributors?from=2023-10-10&to=2023-10-30&type=c)) [blink1073](https://github.com/search?q=repo%3Ajupyter%2Fjupyter_core+involves%3Ablink1073+updated%3A2023-10-10..2023-10-30&type=Issues) | [singingwolfboy](https://github.com/search?q=repo%3Ajupyter%2Fjupyter_core+involves%3Asingingwolfboy+updated%3A2023-10-10..2023-10-30&type=Issues) <!-- <END NEW CHANGELOG ENTRY> --> ```
Links - PyPI: https://pypi.org/project/jupyter-core - Changelog: https://data.safetycli.com/changelogs/jupyter-core/

Update matplotlib from 3.8.0 to 3.8.1.

Changelog ### 3.8.1 ``` This is the first bugfix release of the 3.8.x series. This release contains several bug fixes and adjustments: - Bump setuptools required version because of setuptools_scm v8 - Update ``find_nearest_contour`` and revert contour deprecations - ``allsegs`` and ``allkinds`` return individual segments - Restore default behavior of hexbin mincnt with C provided - Try/except import of Axes3D - Ensure valid path mangling for ContourLabeler - BLD: Remove development dependencies from sdists - FIX 2-tuple of colors in to_rgba_array - Fix issue with non-string labels and legend - Fix issue with locale comma when not using math text - Various type hinting improvements - Various documentation improvements - Improvements to the MacOS backend ```
Links - PyPI: https://pypi.org/project/matplotlib - Changelog: https://data.safetycli.com/changelogs/matplotlib/ - Homepage: https://matplotlib.org

Update nbconvert from 7.9.2 to 7.11.0.

Changelog ### 7.11.0 ``` ([Full Changelog](https://github.com/jupyter/nbconvert/compare/v7.10.0...422dd2a1697b191dc8e11806ddeca314df66c282)) Enhancements made - Support es modules in js includes [2063](https://github.com/jupyter/nbconvert/pull/2063) ([timkpaine](https://github.com/timkpaine)) Maintenance and upkeep improvements - Clean up lint handling and list generics [2065](https://github.com/jupyter/nbconvert/pull/2065) ([blink1073](https://github.com/blink1073)) - Remove not needed pytest-dependency test requirement [2062](https://github.com/jupyter/nbconvert/pull/2062) ([danigm](https://github.com/danigm)) Contributors to this release ([GitHub contributors page for this release](https://github.com/jupyter/nbconvert/graphs/contributors?from=2023-10-30&to=2023-11-06&type=c)) [blink1073](https://github.com/search?q=repo%3Ajupyter%2Fnbconvert+involves%3Ablink1073+updated%3A2023-10-30..2023-11-06&type=Issues) | [danigm](https://github.com/search?q=repo%3Ajupyter%2Fnbconvert+involves%3Adanigm+updated%3A2023-10-30..2023-11-06&type=Issues) | [timkpaine](https://github.com/search?q=repo%3Ajupyter%2Fnbconvert+involves%3Atimkpaine+updated%3A2023-10-30..2023-11-06&type=Issues) <!-- <END NEW CHANGELOG ENTRY> --> ``` ### 7.10.0 ``` ([Full Changelog](https://github.com/jupyter/nbconvert/compare/v7.9.2...48599a4bba00819e4e626fe098eb204977590ee4)) Enhancements made - Update to mermaid 10.6.0, docs keyboard navigation [2058](https://github.com/jupyter/nbconvert/pull/2058) ([bollwyvl](https://github.com/bollwyvl)) Maintenance and upkeep improvements - Fix typing for traitlets 5.13 [2060](https://github.com/jupyter/nbconvert/pull/2060) ([blink1073](https://github.com/blink1073)) - Adopt ruff format [2059](https://github.com/jupyter/nbconvert/pull/2059) ([blink1073](https://github.com/blink1073)) - Update typings and remove dead link [2056](https://github.com/jupyter/nbconvert/pull/2056) ([blink1073](https://github.com/blink1073)) Documentation improvements - Update to mermaid 10.6.0, docs keyboard navigation [2058](https://github.com/jupyter/nbconvert/pull/2058) ([bollwyvl](https://github.com/bollwyvl)) Contributors to this release ([GitHub contributors page for this release](https://github.com/jupyter/nbconvert/graphs/contributors?from=2023-10-05&to=2023-10-30&type=c)) [blink1073](https://github.com/search?q=repo%3Ajupyter%2Fnbconvert+involves%3Ablink1073+updated%3A2023-10-05..2023-10-30&type=Issues) | [bollwyvl](https://github.com/search?q=repo%3Ajupyter%2Fnbconvert+involves%3Abollwyvl+updated%3A2023-10-05..2023-10-30&type=Issues) ```
Links - PyPI: https://pypi.org/project/nbconvert - Changelog: https://data.safetycli.com/changelogs/nbconvert/

Update rpds-py from 0.10.6 to 0.12.0.

Changelog ### 0.12.0 ``` <!-- Release notes generated using configuration in .github/release.yml at v0.12.0 --> **Full Changelog**: https://github.com/crate-py/rpds/compare/v0.11.0...v0.12.0 ``` ### 0.11.0 ``` <!-- Release notes generated using configuration in .github/release.yml at v0.11.0 --> New Contributors * pre-commit-ci made their first contribution in https://github.com/crate-py/rpds/pull/29 **Full Changelog**: https://github.com/crate-py/rpds/compare/v0.10.6...v0.11.0 ```
Links - PyPI: https://pypi.org/project/rpds-py - Changelog: https://data.safetycli.com/changelogs/rpds-py/

Update sphinx-lint from 0.7.0 to 0.8.1.

Changelog ### 0.8.1 ``` What's Changed * Use `require_serial: true` as the default for our pre-commit hook, not `-j1` by AlexWaygood in https://github.com/sphinx-contrib/sphinx-lint/pull/95 **Full Changelog**: https://github.com/sphinx-contrib/sphinx-lint/compare/v0.8.0...v0.8.1 ``` ### 0.8.0 ``` What's Changed * Add link to changelog on pyproject.toml/PyPI by ezio-melotti in https://github.com/sphinx-contrib/sphinx-lint/pull/92 * Fix sh code block in README by jdillard in https://github.com/sphinx-contrib/sphinx-lint/pull/93 * Updates on using Sphinx Lint with pre-commit: * Add docs on how best to use sphinx-lint with pre-commit by AlexWaygood in https://github.com/sphinx-contrib/sphinx-lint/pull/90 * Improve usability of Sphinx Lint with pre-commit by AlexWaygood in https://github.com/sphinx-contrib/sphinx-lint/pull/94 New Contributors * jdillard made their first contribution in https://github.com/sphinx-contrib/sphinx-lint/pull/93 **Full Changelog**: https://github.com/sphinx-contrib/sphinx-lint/compare/v0.7.0...v0.8.0 ```
Links - PyPI: https://pypi.org/project/sphinx-lint - Changelog: https://data.safetycli.com/changelogs/sphinx-lint/

Update sphinxext-opengraph from 0.8.2 to 0.9.0.

Changelog ### 0.9.0 ``` What's Changed * make matplotlib optional by TheTripleV in https://github.com/wpilibsuite/sphinxext-opengraph/pull/104 * Drop EOL Python 3.7, Bump PyPy to 3.9 by hugovk in https://github.com/wpilibsuite/sphinxext-opengraph/pull/106 * Add `:ogp_disable:` metadata field by shiftinv in https://github.com/wpilibsuite/sphinxext-opengraph/pull/86 * feat: allow specifying a custom font for the card text by shuuji3 in https://github.com/wpilibsuite/sphinxext-opengraph/pull/110 New Contributors * shuuji3 made their first contribution in https://github.com/wpilibsuite/sphinxext-opengraph/pull/110 **Full Changelog**: https://github.com/wpilibsuite/sphinxext-opengraph/compare/v0.8.2...v0.9.0 ```
Links - PyPI: https://pypi.org/project/sphinxext-opengraph - Changelog: https://data.safetycli.com/changelogs/sphinxext-opengraph/ - Repo: https://github.com/wpilibsuite/sphinxext-opengraph

Update traitlets from 5.11.2 to 5.13.0.

Changelog ### 5.13.0 ``` ([Full Changelog](https://github.com/ipython/traitlets/compare/v5.12.0...dacbf9b03ebecbd09604ab2fa41e088e3f60b403)) Bugs fixed - Use passed-in `info` argument for `TraitType.error()` [884](https://github.com/ipython/traitlets/pull/884) ([kylebarron](https://github.com/kylebarron)) Maintenance and upkeep improvements - Improve generics handling [886](https://github.com/ipython/traitlets/pull/886) ([blink1073](https://github.com/blink1073)) - Finish Strict Typing [885](https://github.com/ipython/traitlets/pull/885) ([blink1073](https://github.com/blink1073)) Contributors to this release ([GitHub contributors page for this release](https://github.com/ipython/traitlets/graphs/contributors?from=2023-10-25&to=2023-10-30&type=c)) [blink1073](https://github.com/search?q=repo%3Aipython%2Ftraitlets+involves%3Ablink1073+updated%3A2023-10-25..2023-10-30&type=Issues) | [kylebarron](https://github.com/search?q=repo%3Aipython%2Ftraitlets+involves%3Akylebarron+updated%3A2023-10-25..2023-10-30&type=Issues) <!-- <END NEW CHANGELOG ENTRY> --> ``` ### 5.12.0 ``` ([Full Changelog](https://github.com/ipython/traitlets/compare/v5.11.2...b018581f0acd75844bbd7584e233c3ab3126501b)) Enhancements made - Pass \*\*kwds in MetaHasDescriptors __new__ and __init__ [881](https://github.com/ipython/traitlets/pull/881) ([fleming79](https://github.com/fleming79)) Maintenance and upkeep improvements - Adopt sp-repo-review [883](https://github.com/ipython/traitlets/pull/883) ([blink1073](https://github.com/blink1073)) - Cleanup after remove Python 2 support [882](https://github.com/ipython/traitlets/pull/882) ([shadchin](https://github.com/shadchin)) - Add more project URLs, trove classifiers [879](https://github.com/ipython/traitlets/pull/879) ([bollwyvl](https://github.com/bollwyvl)) Documentation improvements - Fix docs version [880](https://github.com/ipython/traitlets/pull/880) ([bollwyvl](https://github.com/bollwyvl)) Contributors to this release ([GitHub contributors page for this release](https://github.com/ipython/traitlets/graphs/contributors?from=2023-10-03&to=2023-10-24&type=c)) [blink1073](https://github.com/search?q=repo%3Aipython%2Ftraitlets+involves%3Ablink1073+updated%3A2023-10-03..2023-10-24&type=Issues) | [bollwyvl](https://github.com/search?q=repo%3Aipython%2Ftraitlets+involves%3Abollwyvl+updated%3A2023-10-03..2023-10-24&type=Issues) | [fleming79](https://github.com/search?q=repo%3Aipython%2Ftraitlets+involves%3Afleming79+updated%3A2023-10-03..2023-10-24&type=Issues) | [pre-commit-ci](https://github.com/search?q=repo%3Aipython%2Ftraitlets+involves%3Apre-commit-ci+updated%3A2023-10-03..2023-10-24&type=Issues) | [shadchin](https://github.com/search?q=repo%3Aipython%2Ftraitlets+involves%3Ashadchin+updated%3A2023-10-03..2023-10-24&type=Issues) ```
Links - PyPI: https://pypi.org/project/traitlets - Changelog: https://data.safetycli.com/changelogs/traitlets/

Update urllib3 from 2.0.6 to 2.0.7.

Changelog ### 2.0.7 ``` ================== * Made body stripped from HTTP requests changing the request method to GET after HTTP 303 "See Other" redirect responses. ```
Links - PyPI: https://pypi.org/project/urllib3 - Changelog: https://data.safetycli.com/changelogs/urllib3/

Update wcwidth from 0.2.8 to 0.2.9.

The bot wasn't able to find a changelog for this release. Got an idea?

Links - PyPI: https://pypi.org/project/wcwidth - Changelog: https://data.safetycli.com/changelogs/wcwidth/ - Repo: https://github.com/jquast/wcwidth