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vgteam
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haplotype-aware-mapping-paper
Scripts for the haplotype-aware mapping paper project
MIT License
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Add an MHC BED to tag reads
#10
adamnovak
closed
6 years ago
0
BWA reads seem to be all wrong for BRCA1
#9
adamnovak
closed
6 years ago
1
Add minaf thresholds at 0.1, 0.01, 0.001, etc.
#8
adamnovak
closed
6 years ago
0
Add snp1kg-minaf-gbwt-mp-pe to plots
#7
adamnovak
closed
6 years ago
0
Do both HG002 and NA12878 (aka HG001)
#6
adamnovak
opened
6 years ago
0
Plot single-ended mapping separately from paired-end
#5
adamnovak
closed
6 years ago
0
Run evaluation script for chr21
#4
adamnovak
closed
6 years ago
0
Compare calling
#3
adamnovak
closed
6 years ago
0
Pull in real data
#2
adamnovak
closed
6 years ago
0
Compare using and not using the gbwt
#1
adamnovak
closed
6 years ago
2