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xg
xg0: a simpler xg index
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Add a forget function to temp file handling
#46
jeizenga
closed
2 years ago
0
Make GFAKluge optional
#45
adamnovak
closed
2 years ago
0
Update to the newest libhandlegraph
#44
jeizenga
closed
2 years ago
0
Add support for converting from the old path name encoding
#43
jeizenga
closed
3 years ago
0
Update mmmulti
#42
jltsiren
closed
3 years ago
0
Fix for_each_handle()
#41
jltsiren
closed
3 years ago
0
Use the vgteam fork of SDSL
#40
jltsiren
closed
3 years ago
0
Merge vg xg
#39
adamnovak
closed
4 years ago
0
OSX build failures
#38
ekg
opened
4 years ago
1
Use a libhandlegraph that lest us rank nodes
#37
adamnovak
closed
4 years ago
0
non-ATGC support
#36
ekg
opened
4 years ago
2
update libhandlegraph
#35
glennhickey
closed
4 years ago
0
Add safety interlock to prevent trying to make an XG with empty nodes
#34
adamnovak
closed
4 years ago
0
Use nid_t and not int64_t for IDs
#33
adamnovak
closed
4 years ago
0
Bump version to go with serialization changes, and make serialization interface consistent
#32
adamnovak
closed
4 years ago
1
Canonicalize edges for indexing
#31
adamnovak
closed
4 years ago
0
Make XG produce unique and reasonably compact edge indexes
#30
adamnovak
closed
4 years ago
0
Path with empty name is added to another path in the xg index
#29
jonassibbesen
opened
4 years ago
2
Revert to default implementation of for_each_step_position_on_handle
#28
glennhickey
closed
4 years ago
1
Implement fast edge/base counting
#27
adamnovak
closed
4 years ago
0
No implementation for `max_path_rank`
#26
cartoonist
opened
4 years ago
0
Update to latest libhandlegraph
#25
glennhickey
closed
4 years ago
0
WIP Trying pybind11 on xg
#24
JervenBolleman
opened
5 years ago
1
Fix versioning in XG paths
#23
jeizenga
closed
5 years ago
0
correct bug with id range calculation
#22
ekg
closed
5 years ago
0
Edge index
#21
ekg
closed
5 years ago
0
Instrument stuff that travis doesn't like
#20
ekg
closed
5 years ago
0
Fix asserts and XG-VG integration
#19
adamnovak
closed
5 years ago
0
our edge types now run from 1 to 4, not 0 to 3
#18
ekg
closed
5 years ago
0
make validation work correctly
#17
ekg
closed
5 years ago
0
Update submodules
#16
glennhickey
closed
5 years ago
0
Fix more dangling file descriptors
#15
glennhickey
closed
5 years ago
0
Fix dangling file descriptors
#14
glennhickey
closed
5 years ago
0
xg construction leaving open file descriptors
#13
glennhickey
closed
5 years ago
2
small cleanup of circular paths
#12
glennhickey
closed
5 years ago
0
Support circular paths from handle graphs
#11
glennhickey
closed
5 years ago
0
Fix from_path_handle_graph()
#10
glennhickey
closed
5 years ago
0
Support empty paths
#9
glennhickey
closed
5 years ago
0
Reversing edges not supported
#8
glennhickey
closed
5 years ago
1
Empty paths not stored
#7
glennhickey
closed
5 years ago
1
update to latest handle graph api version
#6
glennhickey
closed
5 years ago
0
File versioning
#5
jeizenga
closed
5 years ago
0
Unexpected behavior on converting between gfa and xg
#4
6br
opened
5 years ago
6
Speed up XG construction when IDs don't start at 1
#3
jeizenga
closed
5 years ago
0
Creating XG from GFA takes a very long time for graphs whose IDs do not start at 1
#2
jeizenga
opened
5 years ago
1
xg0 is broken
#1
ekg
closed
5 years ago
3