patients' phenotype -prostate cancer

vicsanga / Postre

POSTRE: Prediction Of STRuctural variant Effects

GNU General Public License v3.0

20 stars 1 forks source link

patients' phenotype -prostate cancer #2

Open tgong1 opened 1 year ago

tgong1 commented 1 year ago

Hi,

Thank you for the useful software! We have SV data from prostate cancer patients. I'm wondering which phenotype I should include in column 6 of input when using Postre.

Thank you for your help! Tingting

vicsanga commented 4 months ago

Hi @tgong1, sorry for the late reply I completely missed this question. We do not thing POSTRE current version is a good choice for your disease of interest (prostate cancer) the current version is designed to handle: craniofacial, neurodevelopmental, cardiac and limb congenital diseases. But we are expanding the tool to be capable of handling a larger number of phenotypes. If you are interested on this, please let me know.

tgong1 commented 4 months ago

Hi， Thank you for the reply. I would very happy to see POSTRE can include cancer. Currently, I still included POSTRE in our workflow, while requiring concordance with other pathogenicity prediction tools.

Thank you, Tingting