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virtualcell
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vcell
Virtual Cell Framework
http://vcell.org/
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N5 Exporter Quick Bug Fixes
#1164
AvocadoMoon
closed
7 months ago
0
Story: N5 Export/IJ Plugin Bug Fixes
#1163
AvocadoMoon
closed
6 months ago
0
save finite volume simulation results as zarr
#1162
jcschaff
closed
5 months ago
0
Simularium Zarr support for FiniteVolume simulations
#1161
jcschaff
closed
5 months ago
0
Bump cryptography from 41.0.4 to 42.0.4 in /docker/swarm/vcell-admin
#1160
dependabot[bot]
opened
7 months ago
0
The is2D flag is always false in this version
#1159
danv61
closed
7 months ago
2
The is2D flag is always false in this version
#1158
danv61
closed
7 months ago
1
Bump cryptography from 41.0.4 to 42.0.2 in /docker/swarm/vcell-admin
#1157
dependabot[bot]
closed
7 months ago
1
fix langevin status reporting
#1156
jcschaff
closed
7 months ago
0
langevin solver progress not working
#1155
jcschaff
closed
7 months ago
0
Biomodels Endpoint
#1154
AvocadoMoon
closed
5 months ago
0
Integrate VCell Messaging with Quarkus
#1153
AvocadoMoon
opened
7 months ago
0
VCell Health Check Quarkus
#1152
AvocadoMoon
opened
7 months ago
0
track unsupported biomodel features for SEDML export
#1151
jcschaff
closed
7 months ago
0
update the OMEX export/import unit test to track unsupported features by each model.
#1150
jcschaff
closed
7 months ago
0
Removed superfluous timeout
#1149
CodeByDrescher
closed
7 months ago
0
Bug: RepeatedTasks with multiple ranges exported funny
#1148
CodeByDrescher
opened
7 months ago
0
Epic: Implement REST API Endpoints From VCell API
#1147
AvocadoMoon
opened
7 months ago
0
Normalize Time Index
#1146
AvocadoMoon
closed
7 months ago
0
Invalid Indexing N5 Export
#1145
AvocadoMoon
closed
7 months ago
0
integrate messaging into Langevin solver for remote execution
#1144
jcschaff
closed
7 months ago
0
integrate Langevin solver messaging for HPC
#1143
jcschaff
closed
7 months ago
0
upgrade Macos solvers to fix NFSim failure
#1142
jcschaff
closed
7 months ago
0
N5 export shared vcell simulations and time set specified
#1141
AvocadoMoon
closed
7 months ago
0
fix runtime error for NFSim on Macos
#1140
jcschaff
closed
7 months ago
0
Fixes for langevin solver
#1139
jcschaff
closed
7 months ago
0
Export Shared VCell Simulations and Time Set Specified
#1138
AvocadoMoon
closed
7 months ago
0
SpeciesContextSpec's compareEqual implementation for SpringSaLaD-specific entities
#1137
danv61
closed
8 months ago
2
SpeciesContextSpec's compareEqual implementation for SpringSaLaD-specific entities
#1136
danv61
closed
8 months ago
1
Remote execution of Langevin solver
#1135
jcschaff
closed
7 months ago
0
Deploy s3 to swarm stack
#1134
AvocadoMoon
closed
8 months ago
0
eliminating parasitic sim owner references causing NPE for green button
#1133
danv61
closed
8 months ago
2
eliminating parasitic sim owner references causing NPE for green button
#1132
danv61
closed
8 months ago
0
Persistance of springsalad specific entities
#1131
danv61
closed
8 months ago
1
Persistance of springsalad specific entities
#1130
danv61
closed
8 months ago
0
Finding spatial data
#1129
CodeByDrescher
closed
7 months ago
0
Bump cryptography from 41.0.4 to 42.0.0 in /docker/swarm/vcell-admin
#1128
dependabot[bot]
closed
7 months ago
1
1126 export omex with pubmed
#1127
jcschaff
closed
8 months ago
0
update Export OMEX cli to fetch abstract from Pubmed
#1126
jcschaff
closed
8 months ago
0
Test ci
#1125
CodeByDrescher
closed
8 months ago
0
Springsalad UI and math parser improvements and bug fixing
#1124
danv61
closed
8 months ago
3
Springsalad UI and math parser improvements and bug fixing
#1123
danv61
closed
8 months ago
0
S3 use TLS
#1122
AvocadoMoon
closed
8 months ago
0
Biosimulators upload fixes
#1121
CodeByDrescher
closed
8 months ago
1
trace omex processing to intercept errors for biosimulations-vcell
#1120
jcschaff
closed
8 months ago
0
gather exceptions with context during omex archive execution
#1119
jcschaff
closed
8 months ago
0
Editing or adding a new molecule / species is now properly addressed in existing SS application
#1118
danv61
closed
8 months ago
1
Editing or adding a new molecule / species is now properly addressed in existing SS application
#1117
danv61
closed
8 months ago
1
Have S3 Proxy Utilize TLS
#1116
AvocadoMoon
closed
8 months ago
4
Post-Processed Variables Don't Display Export Progress
#1115
AvocadoMoon
opened
8 months ago
0
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