vitalit-sib msviz-backend issues

vitalit-sib / msviz-backend

A mass spectrometry visualization platform, developed by the PAF & Vital-IT, Swiss Institute of Bioinformatics.

Other

8 stars 5 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

add new method to qcSummaryMongoDbservices

#52 qinfangj closed 9 years ago
3
parse mzXML

#51 rmylonas closed 9 years ago
0
new QcModel and QcMongoDbService classes and the tests

#50 qinfangj closed 9 years ago
11
pull request for QC package

#49 qinfangj closed 9 years ago
4
corrected comment

#48 qinfangj closed 9 years ago
1
corrected comment

#47 qinfangj closed 9 years ago
1
modify FastaParserTest

#46 qinfangj closed 9 years ago
0
stored pealikst as serialized array of numbers

#45 alexmasselot closed 9 years ago
1
implement interface ProteinList

#44 rmylonas opened 9 years ago
0
Protein matches

#43 rmylonas closed 9 years ago
2
create a Score class

#42 rmylonas closed 9 years ago
0
PSM: add charge state in loading + db etc...

#41 alexmasselot closed 9 years ago
1
add additional information about runs

#40 rmylonas closed 9 years ago
1
Peptide sequence with X does not survive import

#39 alexmasselot closed 9 years ago
0
load fasta also eats up all memory

#38 alexmasselot closed 9 years ago
2
X amino acid

#37 alexmasselot closed 9 years ago
1
MGFLoader takes to much memory

#36 alexmasselot closed 9 years ago
1
parse search log

#35 alexmasselot closed 9 years ago
0
load AC and ID for Prtein entries

#34 alexmasselot closed 9 years ago
0
Link modification dictionary with modifications from MzId

#33 rmylonas opened 9 years ago
2
create service to download csv tables

#32 rmylonas closed 9 years ago
1
Setup integration tests

#31 rmylonas opened 9 years ago
0
parse isDecoy information from MzId

#30 rmylonas closed 9 years ago
1
Verify in MzId that all modifications listed individually

#29 rmylonas closed 9 years ago
1
Unimod export

#28 trinidadmartin closed 9 years ago
3
Modifications dictionary into MongoDB

#27 trinidadmartin closed 9 years ago
2
trembl header are not read

#26 alexmasselot closed 9 years ago
2
it shoul dnot be possible to load two mzid with the same searchId

#25 alexmasselot closed 9 years ago
1
set SpectrumId as a combination of runId+SpectrumUniqueId

#24 alexmasselot closed 9 years ago
1
Tests in FastaMongoDBServiceSpecs

#23 rmylonas closed 9 years ago
2
change SpectraSource to RunId

#22 alexmasselot closed 9 years ago
2
Add a SpectrumRef in the PSM (similar to the protein design)

#21 alexmasselot closed 9 years ago
1
backend service on mascot server to mirror fasta file.

#20 alexmasselot closed 9 years ago
0
backend service on mascot server to mirror fasta file.

#19 alexmasselot closed 9 years ago
1
Move source+AC to ProteinRef

#18 alexmasselot closed 9 years ago
2
mongodb query to retrieve the list of protein in a searchId

#17 alexmasselot closed 9 years ago
2
report sequence database stats

#16 alexmasselot closed 9 years ago
4
wrong indexing on sequence collection

#15 alexmasselot closed 9 years ago
1
check how the system handles a total uniprot

#14 alexmasselot closed 9 years ago
1
add a sequence source collection

#13 alexmasselot closed 9 years ago
1
document how to pull dat out of mascot

#12 alexmasselot opened 9 years ago
3
come up with a strategy to link PSMs and sequence source

#11 alexmasselot closed 9 years ago
2
listProteinAcBySearchId

#10 alexmasselot closed 9 years ago
1
findAllPSMsByProteinACAndSearchId

#9 alexmasselot closed 9 years ago
1
list all searchId

#8 alexmasselot closed 9 years ago
2
add searchId to PSM

#7 alexmasselot closed 9 years ago
1
add swagger support

#6 alexmasselot closed 9 years ago
1
PSM from mzid to mongo via a rest query

#5 alexmasselot closed 9 years ago
0
insert PSM into mongo

#4 alexmasselot closed 9 years ago
0
load fasta in mongo via REST interface

#3 alexmasselot closed 9 years ago
0