vivarium-collective bigraph-schema issues

vivarium-collective / bigraph-schema

compositional type schemas

Apache License 2.0

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Can we automatically generate the composite interface/bridge + associated steps from a collection of processes?

#91 prismofeverything opened 3 weeks ago
0
Provide for multiple steps in a single process

#90 prismofeverything opened 3 weeks ago
0
Processes should receive only the state they have a schema for, not any additional keys that may be present from other schemas

#89 prismofeverything opened 1 month ago
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Returning update from process should call `check` to validate the update according to the outputs schema

#88 prismofeverything opened 2 months ago
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Schema is not being filled in when new state is added during simulation runtime

#87 prismofeverything opened 2 months ago
0
Process is receiving keys that are not in its schema (?)

#86 prismofeverything closed 1 month ago
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We need to find a solution for keeping schemas and states in synchrony throughout the various type system operations

#85 prismofeverything opened 2 months ago
0
Composite accepts a "package" key that specifies which types it depends on

#84 prismofeverything opened 2 months ago
3
Provide a method to fold and unfolded schema into its minimal form

#83 prismofeverything closed 1 month ago
0
Is schema key

#82 eagmon closed 4 months ago
0
setting slice with `..` fails

#81 prismofeverything closed 4 months ago
0
add inherit_schema method for inheriting the config_schema of a superclass process

#80 prismofeverything opened 5 months ago
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when registering methods, check the arguments to see if they take the right arguments

#79 prismofeverything closed 1 month ago
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register type can provide default value for `_type` by using the key being registered

#78 prismofeverything closed 1 month ago
0
allow spaces in type parameters

#77 prismofeverything opened 5 months ago
0
construct data transfer object for pydantic serialization

#76 prismofeverything opened 6 months ago
0
make translation from bigraph (hypergraph) to ordinary bipartite graph

#75 prismofeverything opened 6 months ago
0
Make inputs and outputs for edges optional

#74 prismofeverything opened 6 months ago
0
Dataclass

#73 eagmon closed 6 months ago
0
Registry dataclass

#72 eagmon closed 4 months ago
0
Add protocol for accessing processes that are http servers

#71 prismofeverything opened 6 months ago
1
Generate python dataclasses from bigraph-schema

#70 prismofeverything closed 3 months ago
0
shift usage from deep_merge --> core.merge and get_path --> slice and set_path --> set_slice everywhere

#69 prismofeverything opened 6 months ago
1
rename 'state' in Composite config_schema to 'initial_state'

#68 prismofeverything opened 6 months ago
0
Create isomorphism between schema <--> python dataclasses

#67 prismofeverything closed 3 months ago
0
Add queue and stack types

#66 prismofeverything opened 7 months ago
1
Provide a fold to remove units

#65 prismofeverything opened 7 months ago
0
Validate inputs and outputs to the call to `update()` with the inputs and outputs schema

#64 prismofeverything opened 7 months ago
2
Look for caching during access and view/project

#63 prismofeverything opened 8 months ago
1
A "place" type which is a tree with an additional type parameter for the value of the node

#62 prismofeverything opened 8 months ago
0
Notebook

#61 eagmon closed 7 months ago
0
generate dataclass by registry

#60 eagmon closed 4 months ago
0
Remove hydrate_state in favor of making deserialize work in general

#59 prismofeverything closed 8 months ago
0
hydrate_state removes type keys - we need to be able to use schemas in config

#58 prismofeverything closed 3 months ago
0
Emit needs to call serialize

#57 prismofeverything closed 1 month ago
0
On complete, provide nodes for each unconnected edge input or output

#56 prismofeverything closed 3 months ago
0
core.import for type packages (register multiple definitions)

#55 prismofeverything opened 9 months ago
0
Provide a way to import type packages into core

#54 prismofeverything opened 9 months ago
0
Provide a way to parameterize fold methods

#53 prismofeverything closed 8 months ago
0
Implement `add_method` to add a new method to existing types

#52 prismofeverything closed 8 months ago
1
Emitting should be able to be defined based on ports

#51 prismofeverything closed 3 months ago
0
Make apply_schema work with tuple types

#50 prismofeverything closed 8 months ago
0
fixing fill_ports to get the expected results in bigraph-viz

#49 eagmon closed 9 months ago
0
remove repeated bindings from the schema

#48 eagmon closed 9 months ago
0
create function for resolving '..' paths

#47 prismofeverything closed 3 months ago
0
add enum type

#46 prismofeverything closed 3 months ago
0
types access raises exception if type_key not found

#45 eagmon closed 9 months ago
1
implement check/serialize/deserialize edge

#44 prismofeverything closed 9 months ago
0
Move some form of Composite into bigraph-schema

#43 prismofeverything opened 9 months ago
0
update `tree` type to allow a value of its leaf type to be a valid tree

#42 prismofeverything closed 9 months ago
0