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vvoelz
/
biceps
Bayesian inference of conformational populations
https://github.com/vvoelz/biceps
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Use alternative method for rendering jupiter notebooks on readthedocs
#39
robraddi
closed
5 years ago
0
prepare examples based on previous projects using new scripts
#38
yunhuige
closed
5 years ago
0
Write sample function in PosteriorSampling in C or C++
#37
yunhuige
opened
6 years ago
0
possible functions in toolbox
#36
yunhuige
opened
6 years ago
2
setup.py
#35
robraddi
opened
6 years ago
3
unify function or variable names for "distance" and "noe"
#34
yunhuige
closed
6 years ago
1
"docstrings"
#33
robraddi
closed
3 years ago
1
IDEA: replica averaging
#32
vvoelz
opened
6 years ago
1
Reading YAML
#31
robraddi
closed
6 years ago
1
Move arguments in runme file to new_master.py
#30
yunhuige
closed
6 years ago
1
junk file for testing
#29
vvoelz
closed
6 years ago
0
sampler.sample issues organizing the results section
#28
robraddi
closed
6 years ago
0
Change experimental observable names variables as short as possible
#27
yunhuige
closed
6 years ago
15
get restraint.py coded for protection factor
#26
yunhuige
closed
5 years ago
2
range() vs xrange() for python 2.7
#25
yunhuige
closed
5 years ago
1
Change RestraintFile_* files to more proper names
#24
yunhuige
closed
6 years ago
1
Merge functions in Structure/Restraint scripts
#23
yunhuige
closed
6 years ago
1
Merge functions in Posterior Sampling
#22
yunhuige
closed
5 years ago
1
clean up comments
#21
yunhuige
closed
3 years ago
1
raise error warning for each place that we ask input files from people
#20
yunhuige
opened
6 years ago
0
scripts for input file generation
#19
yunhuige
closed
6 years ago
1
make BICePs support Python 3
#18
yunhuige
closed
4 years ago
3
start preparing documents (tutorials)
#17
yunhuige
closed
5 years ago
1
change yaml format to something else
#16
yunhuige
closed
6 years ago
8
To do list (BICePs 2.0 5/7/18)
#15
yunhuige
closed
6 years ago
5
ambiguous groups are not yet supported
#14
robraddi
closed
6 years ago
2
modification of Restraint.py
#13
yunhuige
closed
5 years ago
3
add Karplus relation for peptides [for J coupling constants]
#12
yunhuige
closed
5 years ago
2
modification of postsampler
#11
yunhuige
closed
5 years ago
2
specify default set-up for PosteriorSampler for people
#10
yunhuige
opened
6 years ago
1
remove gamma from structure.py default unless distance input
#9
yunhuige
closed
6 years ago
2
MBAR version
#8
yunhuige
closed
6 years ago
2
To do: fix 6 dimension "for loops" assignment in projects/sandbox_PF/Structure.py
#7
yunhuige
closed
6 years ago
1
Confusing variable name
#6
yunhuige
closed
6 years ago
1
To deal with "nan" in input files
#5
yunhuige
closed
5 years ago
3
File format problem
#4
yunhuige
closed
6 years ago
1
Add headers in the source code for copyright Temple University etc
#3
vvoelz
closed
6 years ago
0
Port all the code with pertinent examples from voelzlab
#2
vvoelz
closed
4 years ago
1
include ambiguous NOEs in a more consistent way
#1
vvoelz
closed
6 years ago
2
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