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waldronlab / CNVRanger

Functionality for CNV analysis
https://bioconductor.org/packages/CNVRanger
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CNVRanger

Summarization and expression/phenotype association analysis for CNV ranges

Bioinformatics publication: https://doi.org/10.1093/bioinformatics/btz632
Bioconductor package: https://bioconductor.org/packages/CNVRanger
CNV workshop: https://github.com/waldronlab/CNVWorkshop

The CNVRanger package implements a comprehensive tool suite for CNV analysis. This includes functionality for summarizing individual CNV calls across a population, assessing overlap with functional genomic regions, and association analysis with gene expression and quantitative phenotypes.