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waldronlab
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curatedMetagenomicData
Curated Metagenomic Data of the Human Microbiome
https://waldronlab.io/curatedMetagenomicData
Artistic License 2.0
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returnSamples() error when setting 'counts = TRUE' for 'relative_abundance' dataType
#306
Guan06
opened
6 days ago
0
curated files for XuQ_2021
#305
jayeech
closed
1 month ago
3
returnSamples(sampleMetadata, dataType = "gene_families") crashing
#304
amsegura
opened
3 months ago
0
add dataset BjorkJR_2024
#303
resphera-jrwhite
opened
7 months ago
0
Issue with returnSamples(sampleMetadata, dataType = "gene_families")
#302
sciencesharon
closed
7 months ago
0
Incorporate GTDB Taxonomy v214 into curatedMetagenomicData
#301
gazollavolpiano
opened
10 months ago
4
Error running "returnSamples" function
#300
marcelladane
closed
10 months ago
1
rownames not matching in tse and assay when using rownames = NCBI
#298
sdgamboa
closed
12 months ago
3
error on rownames = "short" or "NCBI"
#297
lwaldron
closed
12 months ago
1
Output format for the data download
#296
antagomir
closed
12 months ago
3
improved handling of mergeData when different data types are present
#295
antagomir
closed
12 months ago
3
incorporate MetaPhlAn 4
#294
mhmism
opened
1 year ago
2
MetaCardis_2020_a: dataType of list elements is different
#292
lynngao
closed
1 year ago
1
Number of curated studies and potential duplicates?
#291
lyjspx
closed
1 year ago
1
MetaCardis_2020_a: dataType of list elements is different
#290
mmpust
closed
1 year ago
3
add dataset McCullochJA_2022
#289
brymerr921
opened
1 year ago
3
add dataset SpencerCN_2021
#288
brymerr921
opened
1 year ago
2
add dataset BaruchEN_2021
#287
brymerr921
opened
1 year ago
2
add dataset DavarD_2021
#286
brymerr921
opened
1 year ago
2
add dataset RoutyB_2018
#285
brymerr921
opened
1 year ago
2
Vincent 2016 metadata does not reflect updated metadata
#284
cmirzayi
closed
1 year ago
2
Error in validObject(assays) : invalid class “SimpleAssays” object
#283
lwaldron
closed
1 year ago
3
Error: failed to load resource (name: EH5651)
#282
ninglijunXGP
closed
1 year ago
2
how to access metaphlan_bugs_list.stool data using curatedMetagenomicData 3.6?
#281
tommyfuu
closed
1 year ago
4
error following tutorial with function 'query': DEFUNCT: As of ExperimentHub
#280
drelo
closed
2 years ago
2
Difference in species names between Metaphlan and Pathway tables
#279
microsud
closed
2 years ago
3
Restore "what curatedMetagenomicData provides"
#278
lwaldron
closed
2 years ago
0
Specific versus multi-study downloads
#277
microsud
closed
2 years ago
7
"problem too large" when downloading gene_families to CSV
#276
durrantmm
closed
2 years ago
6
automate metadata updates
#275
schifferl
opened
2 years ago
0
unable to download LeeKa2022 relative abundance
#274
abhivij
closed
2 years ago
1
update metadata files
#273
github-actions[bot]
closed
2 years ago
0
Add dataset PetersBA_2019
#272
jwokaty
closed
2 years ago
0
Add dataset FrankelAE_2017
#271
jwokaty
closed
2 years ago
0
Add dataset WindTT_2020
#270
jwokaty
closed
2 years ago
0
Add dataset LeeKA_2022
#269
jwokaty
closed
2 years ago
2
Can't not run any code in my centos 7
#268
JianGuoZhou3
closed
2 years ago
1
Can't install in Mac M1
#267
JianGuoZhou3
closed
2 years ago
2
How to compare my own cohort to your database?
#266
zckoo007
closed
2 years ago
1
gene_families can't download
#265
zckoo007
closed
2 years ago
1
Windows check-package workflow fails
#264
schifferl
closed
2 years ago
1
update metadata files
#262
github-actions[bot]
closed
2 years ago
0
update metadata files
#261
github-actions[bot]
closed
2 years ago
0
add rownames feature
#260
schifferl
closed
2 years ago
0
update metadata files
#258
github-actions[bot]
closed
3 years ago
0
About QC procedure contained in pipeline
#257
luzhang321
closed
3 years ago
1
gene_families RPK or CPM? is it possible to use in regroup function?
#256
luzhang321
closed
3 years ago
1
add link to cMA in readme
#254
jwokaty
closed
3 years ago
1
cannot coerce class ‘structure("dgTMatrix", package = "Matrix")’ to a data.frame
#253
zhuzn
closed
3 years ago
3
update metadata files
#252
github-actions[bot]
closed
3 years ago
0
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