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warelab / gramene-solr

Apache License 2.0
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database gramene gramene-search javascript nodejs solr

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convert mongo genes to solr genes

cd genes
node --max-old-space-size=8192 ./mongo2solr.js > solr_genes.json

load into solr genes core

curl 'http://brie:8984/solr/genes55/update?commit=true' --data-binary @solr_genes.json -H 'Content-type:application/json'

create suggestions

cd ../suggestions
node aux.js http://brie:8984/solr/genes55
node --max-old-space-size=8192 ./genes.js http://brie:8984/solr/genes55 > genes.json

load into solr suggestions core

curl 'http://brie:8984/solr/suggestions55/update?commit=true' --data-binary @GO.json -H 'Content-type:application/json'
curl 'http://brie:8984/solr/suggestions55/update?commit=true' --data-binary @PO.json -H 'Content-type:application/json'
curl 'http://brie:8984/solr/suggestions55/update?commit=true' --data-binary @taxonomy.json -H 'Content-type:application/json'
curl 'http://brie:8984/solr/suggestions55/update?commit=true' --data-binary @domains.json -H 'Content-type:application/json'
curl 'http://brie:8984/solr/suggestions55/update?commit=true' --data-binary @pathways.json -H 'Content-type:application/json'
curl 'http://brie:8984/solr/suggestions55/update?commit=true' --data-binary @genes.json -H 'Content-type:application/json'