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weizhouUMICH
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SAIGE
GNU Lesser General Public License v3.0
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The link isn't working http://pheweb.sph.umich.edu/SAIGE-UKB/
#299
garyzhubc
closed
2 years ago
0
How to use docker with SAIGE-GENE?
#298
garyzhubc
closed
2 years ago
1
Step 2: Why doesn't the correct sample file format work and what if the header is included in the sample file?
#297
garyzhubc
closed
2 years ago
1
Error in X %*% Z : non-conformable arguments
#296
garyzhubc
closed
2 years ago
2
docker saige error
#295
tianbu
closed
2 years ago
4
fixing SAIGE to read haploid X chr data from bgen (from TOPMED-r2 imputation output)
#294
dvh13
closed
2 years ago
2
Does anyone know what's the meaning of this error message?
#293
garyzhubc
closed
2 years ago
4
Error in setgenoTest_bgenDosage_v2: db::StatementStepError
#292
garyzhubc
closed
2 years ago
2
Can I use .bed file instead of .vcf file for the step two of SAIGE-GENE?
#291
garyzhubc
closed
2 years ago
1
Error in STEP2 with quantitative trait
#290
Natalia22123
closed
2 years ago
2
Saving the GRM
#289
FrederikFilip
closed
2 years ago
1
SPAGMMATtest error: --- has B = 16 (not 8)
#288
ConnieXuhm
closed
3 years ago
0
Sample order in phenotype file, plink and imputation file
#287
tbrunetti
closed
2 years ago
1
Interaction in covariates
#286
Natalia22123
closed
2 years ago
2
Could you provide the newest version of .tar.gz file for local R package installation?
#285
yystat
closed
3 years ago
2
Issue with SPAGMMATtest -> scoreTest_SAIGE_binaryTrait_cond_sparseSigma
#284
fdegenhardt-ikmb
closed
2 years ago
1
Error in R/SAIGE_SPATest.R:1865
#283
cxfustc
closed
2 years ago
1
SPAGMMATtest IsOutput inCaseCtrl like output for group
#282
mcolosimo-p4
closed
2 years ago
1
Convergence issues
#281
silviaadiz
closed
2 years ago
1
How to convert vcf file to bgen file?
#280
AfzalBioinfo
closed
2 years ago
2
step2_SPAtests.R do nothing without --chrom parameters even --LOCO=FALSE
#279
xiekunwhy
closed
2 years ago
1
Compilation failure
#278
Sathish9
closed
2 years ago
2
Getting SAIGE-Gene Step 2 to go faster?
#277
apoliakov
closed
2 years ago
6
Cleanup precompiled object files
#276
matuskosut
closed
3 years ago
0
How to get single marker R2 according to SAIGE results?
#275
xiekunwhy
closed
2 years ago
4
do not run configure when installing within conda build
#274
matuskosut
closed
3 years ago
0
external headers should not use path relative to code
#273
matuskosut
closed
3 years ago
0
R-SAIGE on bioconda
#272
matuskosut
closed
2 years ago
26
Error when running fitNULLGLMM on example dataset using Saige 0.42
#271
aokulabasile
closed
2 years ago
2
step4 installation new error
#270
Esther19960123
closed
2 years ago
14
Where is the SAIGE v0.38?
#269
Esther19960123
closed
2 years ago
3
Error in SPAGMMATtest, samples used in glmm model fit do not have dosages
#268
ConnieXuhm
closed
2 years ago
4
Installation error: step 3
#267
ahzhu
closed
2 years ago
3
missing return clauses in non-void c++ functions fills up the RAM
#266
laurent-ntnu
closed
2 years ago
2
'gettimeofday' was not declared
#265
matuskosut
closed
2 years ago
1
fix gettimeofday import
#264
matuskosut
closed
3 years ago
1
Error in SAIGE-GENE - step2
#263
andronekomimi
closed
2 years ago
2
step1 questions for minMAF
#262
ConnieXuhm
closed
4 years ago
0
Modified SPAtest to use for SAIGE
#261
palVJ
closed
2 years ago
3
SAIGE null model fitting fails with "NaN" fixed-effect coefficients
#260
samuelejones
closed
4 years ago
1
Harware requirements and recommendations
#259
olszewskip
closed
2 years ago
2
SAIGE_fitGLMM_fast.o Error 1 during installation
#258
kvedes
closed
2 years ago
5
Step 4 installation problem
#257
ConnieXuhm
closed
2 years ago
5
The impact of MAF filter on constructing GRM and estimating variance ratio
#256
ypnngaa-py
closed
2 years ago
2
Fixed 0 SE when log-pvalue and underflow in reqular p-value
#255
Fedja
closed
4 years ago
0
AC_Allele2 not integer
#254
ypnngaa-py
closed
2 years ago
2
Error in FitNullGLMM: unused arguments (sexCol = opt$sexCol...)
#253
Apb58
closed
2 years ago
4
Pan-UKB chrX data looks weird
#252
Shicheng-Guo
closed
4 years ago
1
Getting error when trying to fit null model
#251
apampana
closed
4 years ago
3
Requesting tags for versions
#250
CanWood
closed
2 years ago
1
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