issues
search
weizhouUMICH
/
SAIGE
GNU Lesser General Public License v3.0
187
stars
72
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
installation issues: ERROR: configuration failed for package ‘SAIGE’
#347
complexgenome
closed
3 years ago
2
*** caught segfault *** address (nil), cause 'memory not mapped'
#346
ionicbond2005
closed
2 years ago
1
No markers are left and end with caught segfault
#345
ionicbond2005
closed
3 years ago
0
SAIGE running error
#344
huanghe0220
closed
2 years ago
2
add r-saige conda installation into readme
#343
matuskosut
closed
3 years ago
0
caught segfault
#342
aliamin222
closed
2 years ago
4
Number of threads parameter step2_SPAtests.R
#341
rkarlssonlinner
closed
3 years ago
2
Conda environment steps - update
#340
matuskosut
closed
3 years ago
1
Error in SPAGMMATtest
#339
ionicbond2005
closed
2 years ago
2
Genotypes and dosages in input
#338
danimatias93
closed
2 years ago
4
an error for the case of only one rare variant within a region
#337
iamhere218
closed
2 years ago
2
SAIGE Install fails - savvy.
#336
aelkhouly85
closed
3 years ago
3
Issue with SAIGE-Gene step 2 (v0.44.2)
#335
longmanz
closed
2 years ago
5
LOCO with bgen chunk files (not split by chromosome)
#334
sboer
closed
2 years ago
3
error with chrX in step 2 (version 0.44.2)
#333
Mingxi-HUANG-Sunnia
opened
3 years ago
11
which subset of variants for fitNULL MODEL
#332
psychrb
closed
2 years ago
2
is it completely necessary to include principal components in the analysis??
#331
corunesa
closed
3 years ago
4
What would be the reason of getting empty results files after step 2 for SAIGE-GENE?
#330
mferreiradasilva
closed
2 years ago
9
Problems with installation: Fortran compiler broken and not cc1
#329
corunesa
closed
3 years ago
2
update and simplify conda environment steps
#328
matuskosut
opened
3 years ago
2
SAIGE GENE requiring excessive memory
#327
jhryu
closed
2 years ago
8
error when running X chromosome
#326
xchangchop
closed
3 years ago
4
empty output for binary trait
#325
iamhere218
closed
3 years ago
2
Segmentation fault (core dumped)
#324
psnehal
closed
2 years ago
2
SAIGE is killed after a few iterations for binary association analysis
#323
buutrg
closed
2 years ago
3
Add `MetaSKAT` to `Remotes`
#322
CreRecombinase
opened
3 years ago
0
Error in setgenoTest_vcfDosage
#321
mferreiradasilva
closed
3 years ago
0
Clarification for gwas with related individuals
#320
rbutleriii
closed
3 years ago
1
Single variant association error in "step 2"
#319
bw-dpm
closed
2 years ago
6
"Error in X %*% Z : non-conformable arguments" error for Continuous Trait Analysis
#318
bensesbg
closed
2 years ago
3
Is it only possible to do step 2 in SAIGE for each chromosome individually?
#317
mferreiradasilva
closed
2 years ago
2
Empty Outputs for Continuous Trait Analysis
#316
bensesbg
closed
2 years ago
3
Asks for .tbi, expects .csi
#315
mferreiradasilva
closed
2 years ago
5
Error in installation
#314
mferreiradasilva
closed
2 years ago
1
CPU use in Step2
#313
fmurgia
closed
3 years ago
4
ERROR! not enough genetic markers with MAF >= 0.01
#312
jameskozubek
closed
3 years ago
1
How is missing data handled in SAIGE-GENE?
#311
garyzhubc
closed
2 years ago
2
Step 1 variance ratio = 1
#310
ConnieXuhm
closed
2 years ago
2
SAIGE Step 1 error line 12: 6843 Killed
#309
Melb1
closed
2 years ago
1
minInfo and negative INFO scores
#308
frahimov
closed
2 years ago
1
What's af_cases and af_controls exactly?
#307
apoliakov
closed
2 years ago
4
Error in SPAGMMATtest samples used in glmm model fit do not have dosages
#306
rnbeaumont
closed
2 years ago
6
Update to Savvy 2.0
#305
jonathonl
closed
3 years ago
3
Very chatty logs
#304
apoliakov
closed
2 years ago
1
SAIGE (linear mixed model, quantitative) and BOLT-LMM yield different results when run on the same dataset
#303
futurologist
closed
2 years ago
8
Using old step 1 with new step 2?
#302
apoliakov
closed
2 years ago
1
Clarity about some arguments in `step1`
#301
agilly
closed
2 years ago
1
The sparse matrix is taking a long time to create. Is there a way to download pre-computed sparse matrix for UKBiobank?
#300
garyzhubc
closed
2 years ago
0
The link isn't working http://pheweb.sph.umich.edu/SAIGE-UKB/
#299
garyzhubc
closed
2 years ago
0
How to use docker with SAIGE-GENE?
#298
garyzhubc
closed
2 years ago
1
Previous
Next