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wejlab
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BatchQC
Batch Effects Quality Control Software
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Updated SE import to not require an assay named "counts"
#104
jessmcc22
closed
1 day ago
0
Updated DESeq2 binomial check to include pval information
#103
jessmcc22
closed
1 week ago
0
Added set.seed() to make negative binomial distribution check reproducible
#102
jessmcc22
closed
3 weeks ago
0
Option to select multiple variables to include in nb analysis
#101
jessmcc22
closed
1 month ago
0
Added DeSeq2 Negative Binomial check for more than 20 samples
#100
jessmcc22
closed
1 month ago
0
Is R > 4.4.0 really a requirement?
#99
onurcanbektas
opened
3 months ago
0
Update DESeq2 nb check to only allow datasets with 20 or fewer samples
#98
jessmcc22
closed
3 months ago
0
Added bladderbatch warning message if not installed
#97
jessmcc22
closed
3 months ago
0
Added NB check; added some user error messages; Updated Variationi Ratios to convert data to factors
#96
jessmcc22
closed
3 months ago
0
Add Ratio Statistic Functionality
#95
jessmcc22
closed
5 months ago
0
Update assay name to underscores
#94
jessmcc22
closed
6 months ago
0
Add Solomon as Contributor; Correct Spelling errors; add log_bool variable to example in Normalization function
#93
jessmcc22
closed
6 months ago
0
Updated BatchQC Intro to reflect current state of shiny app
#92
jessmcc22
closed
6 months ago
0
Added log only normalization option
#91
jessmcc22
closed
7 months ago
0
Merge w/mani2012 BatchQC and updated bioconductor
#90
jessmcc22
closed
7 months ago
0
Add original BatchQC history
#89
jessmcc22
closed
7 months ago
0
Passes all R CMD and BiocCheck tests
#88
jessmcc22
closed
7 months ago
0
Update differential expression function documentation
#87
jessmcc22
closed
7 months ago
0
Updated Example Files to Be more accurate
#86
jessmcc22
closed
7 months ago
0
Updated variation analysis
#85
jessmcc22
closed
7 months ago
0
Added limma functionality
#84
jessmcc22
closed
8 months ago
0
Minor changes to code structure
#83
jessmcc22
closed
1 year ago
0
Updated heatmap plotter function with added features
#82
solomonsjoseph
closed
1 year ago
0
Added checkbox to choose if data is logged for PCA and heatmap
#81
jessmcc22
closed
1 year ago
0
Add side by side comparison of assays for all tabs, like is done for PCA
#80
jessmcc22
opened
1 year ago
0
Added Checkbox to Dendrogram
#79
solomonsjoseph
closed
1 year ago
0
Added more examples
#78
solomonsjoseph
closed
1 year ago
0
Add Checkbox to Dendrogram so users can choose if batch is leaf or text
#77
jessmcc22
closed
1 year ago
1
Update Heatmap Coloring
#76
jessmcc22
closed
6 months ago
0
Add a ReadMe file for github
#75
jessmcc22
closed
1 year ago
0
Load bladderbatch data from the bladderbatch package rather than storing it in BatchQC package
#74
jessmcc22
closed
1 year ago
1
Added Examples for Dendrogram functions
#73
solomonsjoseph
closed
1 year ago
0
Updated Various Check Errors
#72
jessmcc22
closed
1 year ago
0
Updated dendrogram plotting
#71
solomonsjoseph
closed
1 year ago
0
Fixed lintr and BiocCheck errors
#70
jessmcc22
closed
1 year ago
0
updated the circular dendrogram shiny call to include category and batch
#69
jessmcc22
closed
1 year ago
0
Updated Shiny app to add additional dendrogram variable
#68
jessmcc22
closed
1 year ago
0
Fixed CRAN test problems
#67
jessmcc22
closed
1 year ago
0
Corrected Dendrogram Labeling; Added Command line vignette info
#66
jessmcc22
closed
1 year ago
0
Broke up R files into smaller files/functions
#65
jessmcc22
closed
1 year ago
0
Added Vignette Info
#64
jessmcc22
closed
1 year ago
0
Variation Analysis is Incorrect
#63
jessmcc22
closed
6 months ago
1
Heatmap should not plot more than 500 genes
#62
jessmcc22
opened
1 year ago
0
Heatmap Crash w/Combat-Seq
#61
jessmcc22
opened
1 year ago
0
bladderbatch data should be accessed through the bladderbatch package
#60
jessmcc22
closed
1 year ago
0
Volcano Plot not functioning w/Example Data
#59
jessmcc22
closed
6 months ago
0
Corrected plotly/ggplot warning message about replacing previous import
#58
jessmcc22
closed
1 year ago
0
Added bladder data set to example options
#57
jessmcc22
closed
1 year ago
0
updated signature data set to display meta data
#56
jessmcc22
closed
1 year ago
0
Added Signature Data Set and started separating .R files
#55
jessmcc22
closed
1 year ago
0
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