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welch-lab
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MultiVelo
Multi-omic velocity inference
BSD 3-Clause "New" or "Revised" License
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Subsetting before Multivelo analysis
#45
Dalhte
opened
2 weeks ago
1
np.all(nn_cells == adata_atac.obs_names)
#44
Dalhte
closed
2 weeks ago
2
knn_smooth_chrom error: umap
#43
bhhlee
opened
1 month ago
0
'SparseCSCView' object has no attribute 'A'
#42
kalanir
opened
1 month ago
8
multivelo.recover_dynamics_chrom function output .layers[["fit_state']]
#41
siyao-liu
opened
3 months ago
3
Unpaired RNA and ATAC
#39
SITRR
closed
7 months ago
3
Velocyto .loom file creation
#38
AlessiaLeclercq
opened
9 months ago
1
Error happened in computing velocity stream-- "ValueError: setting an array element with a sequence. The requested array has an inhomogeneous shape after 2 dimensions. The detected shape was (1, 4) + inhomogeneous part."
#36
wenhu0701
closed
9 months ago
4
cannot read example data 10X_multiome_mouse_brain.loom
#35
wenhu0701
closed
10 months ago
1
Cannot reproduce Fig4a in the SHARE-seq example
#34
xixi-cathy
closed
3 months ago
3
SHARE-seq mouse skin velocyto output
#33
chelseabright96
opened
12 months ago
2
how to create DTW ?
#32
SinghalDivya
opened
1 year ago
7
Aggregating peaks returns empty anndata object
#31
MoritzTh
closed
1 year ago
1
Integrating several samples, vanishing genes :)
#30
Dalhte
closed
2 weeks ago
4
aggregating peaks without 10x feature linkage
#29
jhong26
opened
1 year ago
2
ValueError: arange: cannot compute length
#28
franciskim-yonsei
closed
1 year ago
7
cell annotations for HSPC dataset
#27
waltno
opened
1 year ago
1
ZeroDivisionError: division by zero in mv.knn_smooth_chrom
#26
rdf1993
opened
1 year ago
5
Multi-omic
#25
zhangqc723
opened
1 year ago
1
error while calculating latent_time
#22
SinghalDivya
closed
1 year ago
17
Question re: root cells in latent time / velocity streams
#20
ishahakm
opened
1 year ago
2
ModuleNotFoundError: No module named 'importlib.metadata'
#18
AnaAzambuja
closed
1 year ago
11
MultiVelo for multipo samples
#17
Lei-Guo
opened
1 year ago
1
'multivelo.velocity_embedding_stream' plotting
#16
WangRong423
opened
1 year ago
1
"TypeError...invalid key" during mv.recover_dynamics_chrom()
#13
anderswe
closed
1 year ago
2
Questions about error "arange: cannot compute length"
#12
WangRong423
closed
1 year ago
3
Velocity/pseudotime inconsistencies
#11
MoLuLuMo
opened
1 year ago
2
Cannot subset using adata_rna = adata_rna[cell_annot.index,:]
#7
JasonOSS
closed
2 years ago
5
Multivelo recover_dynamics_chrom function question
#6
AlMuCan
closed
1 year ago
3
Questions about error "cannot compute length" at line 1478.
#5
Aitar
closed
2 years ago
5
Questions about multiple sample analysis
#4
WangRong423
closed
1 year ago
4
How to build GRN
#3
Dan-121
opened
2 years ago
2
import multivelo KeyError
#2
mossconfuse
closed
2 years ago
4
Missing cellranger file
#1
longfeili5170
closed
2 years ago
5