No installation support: bioconductor has marked as deprecated

[tbrunetti]

metaX can no longer be installed on R 3.2 or greater. It looks like the package dependency mixOmics is only supported on R versions 3.5, however metaX is only supported on R version 3.2, therefore due to the higher mixOmics package dependency metaX cannot be installed on any versions of R.

Is there any plan to resolve this in the near future?

[wenbostar]

The latest version of metaX in github (https://github.com/wenbostar/metaX/) supports R version 3.5. I didn't submit the latest version to bioconductor. You can install the latest version of metaX through the following method:

# Install the development version from GitHub:
if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("wenbostar/metaX")

Please feel free to let me know if you have any other questions.

[tbrunetti]

Thank you for your reply. I tried the above prior to opening the issue without any luck, but I will try it again.

[wenbostar]

Please let me know what error you got.

[arehartc]

I have the same problem as tbrunetti, using your instructions above I get the following error:

` installing source* package ‘ModelMetrics’ ... package ‘ModelMetrics’ successfully unpacked and MD5 sums checked libs /usr/bin/clang++ -I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/chris/Library/R/3.5/library/Rcpp/include" -I/opt/local/include -isysroot/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -fPIC -pipe -Os -stdlib=libc++ -isysroot/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -arch x86_64 -c RcppExports.cpp -o RcppExports.o /usr/bin/clang++ -I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/chris/Library/R/3.5/library/Rcpp/include" -I/opt/local/include -isysroot/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -fPIC -pipe -Os -stdlib=libc++ -isysroot/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -arch x8664 -c auc.cpp -o auc.o auc.cpp:2:10: fatal error: 'omp.h' file not found

include

     ^~~~~~~

1 error generated. make: *** [auc_.o] Error 1 ERROR: compilation failed for package ‘ModelMetrics’

• removing ‘/Users/chris/Library/R/3.5/library/ModelMetrics’ Error in i.p(...) : (converted from warning) installation of package ‘ModelMetrics’ had non-zero exit status`

***UPDATE**** https://stackoverflow.com/questions/25990296/how-to-include-omp-h-in-os-x/52871786#52871786 solved my issues

[wenbostar]

@arehartc , great, thanks for your update.