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wenbostar / metaX

metaX: a flexible and comprehensive software for processing omics data.
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lipidomics machine-learning mass-spectrometry metabolomics metax msms pipeline quality-control

readme

metaX

metaX: An Automatic and Comprehensive Pipeline for Processing Untargeted Metabolomics Data.

Join the chat at https://gitter.im/metaX-metabolomics/Lobby

Installation

# The latest version of metaX is no longer available at Bioconductor.
# Install the development version from GitHub:
if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
install.packages("remotes")
BiocManager::install("wenbostar/metaX")

Usage

Please follow the instruction in the metaX document.

Citation

To cite the metaX package in publications, please use:

Wen B, Mei Z, Zeng C, et al. metaX: a flexible and comprehensive software for processing metabolomics data. BMC bioinformatics, 2017, 18(1): 183. DOI: 10.1186/s12859-017-1579-y

Contribution

Contributions to the package are more than welcome.

Function request

I'm working on developing a new version of metaX. If you have any new functions which you want to be added into metaX, please feel free to open an issue to describe what you want. I will discuss with you about how to implement that in the new version.