grandrews
commented
1 year ago Hi Yaqiao!
Thanks so much for pointing that out, we will add the TF to the MEME file so that information is carried along in downstream analyses and make sure the naming conventions are consistent across files. In the meantime, here is a text file of the HT-SELEX accession, "ERR" number, and the TF! Please feel free to reach out if there is anything more you need in the interim!
Best,
Greg
From: Yaqiao @.> Sent: Thursday, March 16, 2023 5:06 PM To: weng-lab/motif-workflow @.> Cc: Subscribed @.***> Subject: [weng-lab/motif-workflow] A single HT-SELEX motif has two different names in the factorbook database (Issue #2)
Hi Team,
Recently I meet a problem when using the dataset of HT-SELEX motifs. The same motifs for HT-SELEX in the factorbook database have two different names from the two download resource:
- Download from HT-SELEX Catalog https://downloads.wenglab.org/factorbook-download/all-selex-motifs.meme.gzhttps://nam10.safelinks.protection.outlook.com/?url=https%3A%2F%2Fdownloads.wenglab.org%2Ffactorbook-download%2Fall-selex-motifs.meme.gz&data=05%7C01%7Cgregory.andrews%40umassmed.edu%7C90c7a709cbca4bf6800e08db26624c28%7Cee9155fe2da34378a6c44405faf57b2e%7C0%7C0%7C638145976800817367%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=XPwnqG6cRitxJqXz7tgOwcB2bmoUV0eGgZ4mQe4WyjU%3D&reserved=0
- Downloaded by click the "export motif(MEME)" button on the Transcription factor webpage, for example https://www.factorbook.org/tf/human/CTCF/deeplearnedselexmotifhttps://nam10.safelinks.protection.outlook.com/?url=https%3A%2F%2Fwww.factorbook.org%2Ftf%2Fhuman%2FCTCF%2Fdeeplearnedselexmotif&data=05%7C01%7Cgregory.andrews%40umassmed.edu%7C90c7a709cbca4bf6800e08db26624c28%7Cee9155fe2da34378a6c44405faf57b2e%7C0%7C0%7C638145976800817367%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=71TOMV8NRBs46lsQA8Fo1yv3WLKxdEgVx5seiEa5vd4%3D&reserved=0
For example, in the file all-selex-motifs.meme.gz downloaded from HT-SELEX Catalog, there is a motif named "ERR173155", but there is no information about the Transcription Factor for this motif(usually in some databases like JASPAR, the TF info will be contained in the motif name).
''' MOTIF ERR173155 letter-probability matrix: alength= 4 w= 12 nsites= 49 E= 0 0.1129 0.0928 0.6914 0.1029 0.1179 0.6925 0.0936 0.0960 0.0117 0.9701 0.0081 0.0101 0.4128 0.5225 0.0296 0.0351 0.0186 0.7485 0.0059 0.2271 0.0118 0.9670 0.0113 0.0098 0.0391 0.0254 0.0376 0.8979 0.6195 0.0573 0.1971 0.1261 0.0740 0.1985 0.6007 0.1268 0.0851 0.3797 0.0467 0.4885 0.0364 0.0318 0.8863 0.0456 0.1007 0.0616 0.6782 0.1595 '''
Actually, it is the first motif of CTCF, if we downloaded by click the "export motif(MEME)" button on this webpage https://www.factorbook.org/tf/human/CTCF/deeplearnedselexmotifhttps://nam10.safelinks.protection.outlook.com/?url=https%3A%2F%2Fwww.factorbook.org%2Ftf%2Fhuman%2FCTCF%2Fdeeplearnedselexmotif&data=05%7C01%7Cgregory.andrews%40umassmed.edu%7C90c7a709cbca4bf6800e08db26624c28%7Cee9155fe2da34378a6c44405faf57b2e%7C0%7C0%7C638145976800817367%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=71TOMV8NRBs46lsQA8Fo1yv3WLKxdEgVx5seiEa5vd4%3D&reserved=0, this motif has got a new name "Jolma-2013".
''' MEME version 4.5 ALPHABET= ACGT
MOTIF Jolma-2013_ letter-probability matrix: alength= 4 w= 12 nsites= 0 E= 0 0.1129 0.0928 0.6914 0.1029 0.1179 0.6925 0.0936 0.0960 0.0117 0.9701 0.0081 0.0101 0.4128 0.5225 0.0296 0.0351 0.0186 0.7485 0.0059 0.2271 0.0118 0.9670 0.0113 0.0098 0.0391 0.0254 0.0376 0.8979 0.6195 0.0573 0.1971 0.1261 0.0740 0.1985 0.6007 0.1268 0.0851 0.3797 0.0467 0.4885 0.0364 0.0318 0.8863 0.0456 0.1007 0.0616 0.6782 0.1595 '''
Is there a special reason for setting different names for the same motif?
Another question related is, do you have a table for looking up the Transcription factor name of the motif?
I downloaded the
For example, by directly searching with the name "ERR173155" in the database, we can't get the right result. By searching with the matrix, it will match some similar motifs but not exactly the same one. May I get some suggestions from you on how to find out the TF of each motif in the HT-SELEX catalog?
Thank you! Looking forward to your reply!
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EVX1 ERR1003150 EVX1 ERR1003152 EVX1 ERR1003147 EVX1 ERR1003149 EVX1 ERR1003151 EVX1 ERR1003153 EVX2 ERR195177 EVX2 ERR195178 EVX2 ERR195179 EVX2 ERR195180 EVX2 ERR1003155 EVX2 ERR1003157 EVX2 ERR1003159 EVX2 ERR1003161 EVX2 ERR1003154 EVX2 ERR1003156 EVX2 ERR1003158 EVX2 ERR1003160 FERD3L ERR1003162 FERD3L ERR1003164 FERD3L ERR1003166 FERD3L ERR1003168 FERD3L ERR1003163 FERD3L ERR1003165 FERD3L ERR1003167 FERD3L ERR1003169 FEV ERR195597 FEV ERR195598 FEV ERR195599 FEV ERR195600 FEV ERR1003170 FEV ERR1003172 FEV ERR1003174 FEV ERR1003176 FEV ERR1003171 FEV ERR1003173 FEV ERR1003175 FEV ERR1003177 FIGLA ERR194877 FIGLA ERR194878 FIGLA ERR194879 FIGLA ERR194880 FIGLA ERR1003178 FIGLA ERR1003180 FIGLA ERR1003182 FIGLA ERR1003184 FIGLA ERR1003179 FIGLA ERR1003181 FIGLA ERR1003183 FIGLA ERR1003185 FLI1 ERR194897 FLI1 ERR194898 FLI1 ERR194899 FLI1 ERR194900 FLI1 ERR188731 FLI1 ERR188732 FLI1 ERR188733 FLI1 ERR1003187 FLI1 ERR1003189 FLI1 ERR1003191 FLI1 ERR1003193 FLI1 ERR1003194 FLI1 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ERR1003254 FOXA3 ERR1003256 FOXB1 ERR194319 FOXB1 ERR194320 FOXB1 ERR194321 FOXB1 ERR194322 FOXB1 ERR194323 FOXB1 ERR193789 FOXB1 ERR1003259 FOXB1 ERR1003261 FOXB1 ERR1003263 FOXB1 ERR1003265 FOXB1 ERR1003258 FOXB1 ERR1003260 FOXB1 ERR1003262 FOXB1 ERR1003264 FOXC1 ERR194850 FOXC1 ERR194851 FOXC1 ERR194326 FOXC1 ERR194327 FOXC1 ERR194328 FOXC1 ERR194329 FOXC2 ERR194331 FOXC2 ERR194332 FOXC2 ERR194333 FOXC2 ERR194334 FOXC2 ERR194335 FOXC2 ERR1003266 FOXC2 ERR1003268 FOXC2 ERR1003270 FOXC2 ERR1003272 FOXC2 ERR1003267 FOXC2 ERR1003269 FOXC2 ERR1003271 FOXC2 ERR1003273 FOXD2 ERR195601 FOXD2 ERR195602 FOXD2 ERR195603 FOXD2 ERR195604 FOXD2 ERR1003275 FOXD2 ERR1003277 FOXD2 ERR1003279 FOXD2 ERR1003281 FOXD2 ERR1003274 FOXD2 ERR1003276 FOXD2 ERR1003278 FOXD2 ERR1003280 FOXD3 ERR195606 FOXD3 ERR195607 FOXD3 ERR195608 FOXD3 ERR1003283 FOXD3 ERR1003285 FOXD3 ERR1003287 FOXD3 ERR1003289 FOXD3 ERR1003282 FOXD3 ERR1003284 FOXD3 ERR1003286 FOXD3 ERR1003288 FOXE1 ERR1003290 FOXE1 ERR1003292 FOXE1 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ERR1003393 FOXP3 ERR1003388 FOXP3 ERR1003390 FOXP3 ERR1003392 FOXQ1 ERR1003395 FOXQ1 ERR1003397 FOXQ1 ERR1003401 FOXQ1 ERR1003400 FOXR2 ERR1003403 FOXR2 ERR1003405 FOXR2 ERR1003407 FOXR2 ERR1003409 FOXR2 ERR1003402 FOXR2 ERR1003404 FOXR2 ERR1003406 FOXR2 ERR1003408 GABPA ERR194203 GABPA ERR1003410 GABPA ERR1003412 GABPA ERR1003414 GABPA ERR1003416 GABPA ERR1003411 GABPA ERR1003413 GABPA ERR1003415 GABPA ERR1003417 GATA1 ERR1003418 GATA1 ERR1003420 GATA1 ERR1003422 GATA1 ERR1003424 GATA1 ERR1003419 GATA1 ERR1003421 GATA1 ERR1003423 GATA1 ERR1003425 GATA2 ERR1003427 GATA2 ERR1003429 GATA2 ERR1003431 GATA2 ERR1003433 GATA2 ERR1003426 GATA2 ERR1003428 GATA2 ERR1003430 GATA2 ERR1003432 GATA3 ERR188747 GATA3 ERR188748 GATA3 ERR188749 GATA3 ERR188743 GATA3 ERR188744 GATA3 ERR188745 GATA3 ERR1003435 GATA3 ERR1003437 GATA3 ERR1003439 GATA3 ERR1003441 GATA3 ERR1003434 GATA3 ERR1003436 GATA3 ERR1003438 GATA3 ERR1003440 GATA4 ERR195185 GATA4 ERR195186 GATA4 ERR195187 GATA4 ERR195188 GATA4 ERR1003443 GATA4 ERR1003445 GATA4 ERR1003447 GATA4 ERR1003449 GATA4 ERR1003442 GATA4 ERR1003444 GATA4 ERR1003446 GATA4 ERR1003448 GATA5 ERR195189 GATA5 ERR195190 GATA5 ERR195191 GATA5 ERR195192 GATA5 ERR1003450 GATA5 ERR1003452 GATA5 ERR1003454 GATA5 ERR1003456 GATA5 ERR1003459 GATA5 ERR1003461 GATA5 ERR1003463 GATA5 ERR1003465 GATA5 ERR1003451 GATA5 ERR1003453 GATA5 ERR1003455 GATA5 ERR1003457 GATA5 ERR1003458 GATA5 ERR1003460 GATA5 ERR1003462 GATA5 ERR1003464 GATA6 ERR1003466 GATA6 ERR1003468 GATA6 ERR1003470 GATA6 ERR1003472 GATA6 ERR1003467 GATA6 ERR1003469 GATA6 ERR1003471 GATA6 ERR1003473 GBX1 ERR195195 GBX1 ERR195196 GBX1 ERR194764 GBX1 ERR194765 GBX1 ERR194766 GBX1 ERR194767 GBX1 ERR194768 GBX2 ERR195611 GBX2 ERR195612 GBX2 ERR195197 GBX2 ERR195198 GBX2 ERR195199 GBX2 ERR195200 GBX2 ERR193791 GBX2 ERR193792 GBX2 ERR193793 GBX2 ERR1003474 GBX2 ERR1003476 GBX2 ERR1003478 GBX2 ERR1003480 GBX2 ERR1003483 GBX2 ERR1003485 GBX2 ERR1003487 GBX2 ERR1003489 GBX2 ERR1003475 GBX2 ERR1003477 GBX2 ERR1003479 GBX2 ERR1003481 GBX2 ERR1003482 GBX2 ERR1003484 GBX2 ERR1003486 GBX2 ERR1003488 GCM1 ERR195202 GCM1 ERR195203 GCM1 ERR195204 GCM1 ERR193796 GCM1 ERR193797 GCM1 ERR1003491 GCM1 ERR1003493 GCM1 ERR1003495 GCM1 ERR1003497 GCM1 ERR1003490 GCM1 ERR1003492 GCM1 ERR1003494 GCM1 ERR1003496 GCM2 ERR195206 GCM2 ERR195207 GCM2 ERR195208 GCM2 ERR1003498 GCM2 ERR1003500 GCM2 ERR1003502 GCM2 ERR1003504 GCM2 ERR1003499 GCM2 ERR1003501 GCM2 ERR1003503 GCM2 ERR1003505 GFI1B ERR1003514 GFI1B ERR1003516 GFI1B ERR1003518 GFI1B ERR1003520 GFI1B ERR1003515 GFI1B ERR1003517 GFI1B ERR1003519 GFI1B ERR1003521 GFI1 ERR1003506 GFI1 ERR1003508 GFI1 ERR1003510 GFI1 ERR1003512 GFI1 ERR1003507 GFI1 ERR1003509 GFI1 ERR1003511 GFI1 ERR1003513 GLI2 ERR194336 GLI2 ERR194337 GLI2 ERR194338 GLI2 ERR194339 GLI2 ERR194340 GLI2 ERR194341 GLI2 ERR1003523 GLI2 ERR1003525 GLI2 ERR1003527 GLI2 ERR1003529 GLI2 ERR1003522 GLI2 ERR1003524 GLI2 ERR1003526 GLI2 ERR1003528 GLI3 ERR1003530 GLI3 ERR1003532 GLI3 ERR1003534 GLI3 ERR1003536 GLI3 ERR1003531 GLI3 ERR1003533 GLI3 ERR1003535 GLI3 ERR1003537 GLIS1 ERR194815 GLIS1 ERR194816 GLIS1 ERR194817 GLIS1 ERR194818 GLIS1 ERR1003539 GLIS1 ERR1003541 GLIS1 ERR1003543 GLIS1 ERR1003545 GLIS1 ERR1003538 GLIS1 ERR1003540 GLIS1 ERR1003542 GLIS1 ERR1003544 GLIS2 ERR195211 GLIS2 ERR195212 GLIS2 ERR1003546 GLIS2 ERR1003548 GLIS2 ERR1003550 GLIS2 ERR1003552 GLIS2 ERR1003547 GLIS2 ERR1003549 GLIS2 ERR1003551 GLIS2 ERR1003553 GLIS3 ERR194620 GLIS3 ERR194621 GLIS3 ERR194622 GLIS3 ERR194624 GMEB1 ERR1003554 GMEB1 ERR1003556 GMEB1 ERR1003558 GMEB1 ERR1003560 GMEB1 ERR1003559 GMEB1 ERR1003561 GMEB2 ERR195214 GMEB2 ERR195215 GMEB2 ERR195216 GMEB2 ERR194626 GMEB2 ERR194627 GMEB2 ERR194628 GMEB2 ERR194629 GMEB2 ERR194630 GMEB2 ERR194631 GMEB2 ERR1003562 GMEB2 ERR1003564 GMEB2 ERR1003563 GMEB2 ERR1003565 GRHL1 ERR194760 GRHL1 ERR194761 GRHL1 ERR194763 GRHL1 ERR248790 GRHL1 ERR194989 GRHL1 ERR194990 GRHL1 ERR194991 GRHL1 ERR194992 GRHL1 ERR1003567 GRHL1 ERR1003569 GRHL1 ERR1003571 GRHL1 ERR1003573 GRHL1 ERR1003566 GRHL1 ERR1003568 GRHL1 ERR1003570 GRHL1 ERR1003572 GSC2 ERR194027 GSC2 ERR194028 GSC2 ERR194029 GSC2 ERR1003591 GSC2 ERR1003593 GSC2 ERR1003595 GSC2 ERR1003597 GSC2 ERR1003590 GSC2 ERR1003592 GSC2 ERR1003594 GSC2 ERR1003596 GSC ERR193799 GSC ERR193800 GSC ERR193801 GSC ERR1003574 GSC ERR1003576 GSC ERR1003578 GSC ERR1003580 GSC ERR1003583 GSC ERR1003585 GSC ERR1003587 GSC ERR1003589 GSC ERR1003575 GSC ERR1003577 GSC ERR1003579 GSC ERR1003581 GSC ERR1003582 GSC ERR1003584 GSC ERR1003586 GSC ERR1003588 GSX1 ERR195219 GSX1 ERR195220 GSX1 ERR1003598 GSX1 ERR1003600 GSX1 ERR1003602 GSX1 ERR1003604 GSX1 ERR1003599 GSX1 ERR1003601 GSX1 ERR1003603 GSX1 ERR1003605 GSX2 ERR195221 GSX2 ERR195222 GSX2 ERR195223 GSX2 ERR195224 GSX2 ERR1003606 GSX2 ERR1003608 GSX2 ERR1003610 GSX2 ERR1003612 GSX2 ERR1003607 GSX2 ERR1003609 GSX2 ERR1003611 GSX2 ERR1003613 HAND2 ERR1003616 HAND2 ERR1003618 HAND2 ERR1003620 HAND2 ERR1003617 HES1 ERR1003622 HES1 ERR1003624 HES1 ERR1003626 HES1 ERR1003628 HES1 ERR1003623 HES1 ERR1003625 HES1 ERR1003627 HES2 ERR1003631 HES2 ERR1003633 HES2 ERR1003635 HES2 ERR1003637 HES2 ERR1003630 HES2 ERR1003632 HES5 ERR195227 HES5 ERR195228 HES5 ERR194342 HES5 ERR194343 HES5 ERR194344 HES5 ERR194345 HES5 ERR194346 HES5 ERR194347 HES5 ERR1003638 HES5 ERR1003640 HES5 ERR1003642 HES5 ERR1003644 HES5 ERR1003639 HES5 ERR1003641 HES5 ERR1003643 HES5 ERR1003645 HES6 ERR1003651 HES6 ERR1003653 HES7 ERR194882 HES7 ERR194883 HES7 ERR194884 HES7 ERR1003655 HES7 ERR1003657 HES7 ERR1003659 HES7 ERR1003661 HES7 ERR1003654 HES7 ERR1003656 HES7 ERR1003658 HES7 ERR1003660 HESX1 ERR195614 HESX1 ERR195615 HESX1 ERR195616 HESX1 ERR1003663 HESX1 ERR1003665 HESX1 ERR1003667 HESX1 ERR1003669 HESX1 ERR1003662 HESX1 ERR1003664 HESX1 ERR1003666 HESX1 ERR1003668 HEY1 ERR195230 HEY1 ERR195231 HEY1 ERR195232 HEY1 ERR1003670 HEY1 ERR1003672 HEY1 ERR1003675 HEY1 ERR1003677 HEY1 ERR1003679 HEY1 ERR1003681 HEY1 ERR1003671 HEY1 ERR1003673 HEY1 ERR1003674 HEY1 ERR1003676 HEY1 ERR1003678 HEY1 ERR1003680 HEY2 ERR195235 HEY2 ERR195236 HEY2 ERR194032 HEY2 ERR194033 HEY2 ERR1003683 HEY2 ERR1003685 HEY2 ERR1003687 HEY2 ERR1003689 HEY2 ERR1003691 HEY2 ERR1003693 HEY2 ERR1003695 HEY2 ERR1003697 HEY2 ERR1003682 HEY2 ERR1003684 HEY2 ERR1003686 HEY2 ERR1003688 HEY2 ERR1003690 HEY2 ERR1003692 HEY2 ERR1003694 HEY2 ERR1003696 HIC1 ERR195630 HIC1 ERR195631 HIC1 ERR195632 HIC1 ERR1003698 HIC1 ERR1003700 HIC1 ERR1003702 HIC1 ERR1003704 HIC1 ERR1003699 HIC1 ERR1003701 HIC1 ERR1003703 HIC1 ERR1003705 HIC2 ERR188752 HIC2 ERR188753 HINFP1 ERR194994 HINFP1 ERR194995 HINFP1 ERR194996 HLF ERR194696 HLF ERR194697 HLF ERR193703 HLF ERR193704 HLF ERR193705 HLF ERR1003707 HLF ERR1003709 HLF ERR1003711 HLF ERR1003713 HLF ERR1003706 HLF ERR1003708 HLF ERR1003710 HLF ERR1003712 HMBOX1 ERR195619 HMBOX1 ERR195620 HMBOX1 ERR1003715 HMBOX1 ERR1003717 HMBOX1 ERR1003719 HMBOX1 ERR1003721 HMBOX1 ERR1003714 HMBOX1 ERR1003716 HMBOX1 ERR1003718 HMBOX1 ERR1003720 HMX1 ERR195621 HMX1 ERR195622 HMX1 ERR195623 HMX1 ERR195624 HMX1 ERR1003722 HMX1 ERR1003724 HMX1 ERR1003726 HMX1 ERR1003728 HMX1 ERR1003723 HMX1 ERR1003725 HMX1 ERR1003727 HMX1 ERR1003729 HMX2 ERR195239 HMX2 ERR195240 HMX2 ERR1003731 HMX2 ERR1003733 HMX2 ERR1003735 HMX2 ERR1003737 HMX2 ERR1003739 HMX2 ERR1003741 HMX2 ERR1003743 HMX2 ERR1003745 HMX2 ERR1003730 HMX2 ERR1003732 HMX2 ERR1003734 HMX2 ERR1003736 HMX2 ERR1003738 HMX2 ERR1003740 HMX2 ERR1003742 HMX2 ERR1003744 HMX3 ERR194348 HMX3 ERR194349 HMX3 ERR194350 HMX3 ERR194351 HMX3 ERR194352 HMX3 ERR194353 HNF1A ERR194997 HNF1A ERR194998 HNF1A ERR194999 HNF1A ERR195000 HNF1B ERR195001 HNF1B ERR195002 HNF1B ERR195003 HNF1B ERR195004 HNF4A ERR195634 HNF4A ERR195635 HNF4A ERR195636 HNF4A ERR194035 HNF4A ERR194036 HNF4A ERR194037 HNF4A ERR194354 HNF4A ERR194355 HNF4A ERR194356 HNF4A ERR194357 HNF4A ERR194358 HNF4A ERR194359 HNF4A ERR1003746 HNF4A ERR1003750 HNF4A ERR1003752 HNF4A ERR1003747 HNF4A ERR1003749 HNF4A ERR1003751 HNF4A ERR1003753 HOMEZ ERR195242 HOMEZ ERR195243 HOMEZ ERR195244 HOXA10 ERR194360 HOXA10 ERR194361 HOXA10 ERR194362 HOXA10 ERR194363 HOXA10 ERR194364 HOXA10 ERR194365 HOXA10 ERR1003763 HOXA10 ERR1003765 HOXA10 ERR1003767 HOXA10 ERR1003769 HOXA10 ERR1003770 HOXA10 ERR1003772 HOXA10 ERR1003774 HOXA10 ERR1003776 HOXA10 ERR1003762 HOXA10 ERR1003764 HOXA10 ERR1003766 HOXA10 ERR1003768 HOXA10 ERR1003771 HOXA10 ERR1003773 HOXA10 ERR1003775 HOXA10 ERR1003777 HOXA11 ERR195638 HOXA11 ERR195639 HOXA11 ERR195640 HOXA11 ERR1003778 HOXA11 ERR1003780 HOXA11 ERR1003782 HOXA11 ERR1003784 HOXA11 ERR1003779 HOXA11 ERR1003781 HOXA11 ERR1003783 HOXA11 ERR1003785 HOXA13 ERR194039 HOXA13 ERR194040 HOXA13 ERR194041 HOXA13 ERR193804 HOXA13 ERR193805 HOXA13 ERR1003786 HOXA13 ERR1003788 HOXA13 ERR1003790 HOXA13 ERR1003792 HOXA13 ERR1003795 HOXA13 ERR1003797 HOXA13 ERR1003799 HOXA13 ERR1003801 HOXA13 ERR1003787 HOXA13 ERR1003789 HOXA13 ERR1003791 HOXA13 ERR1003793 HOXA13 ERR1003794 HOXA13 ERR1003796 HOXA13 ERR1003798 HOXA13 ERR1003800 HOXA1 ERR194043 HOXA1 ERR194044 HOXA1 ERR194045 HOXA1 ERR1003755 HOXA1 ERR1003757 HOXA1 ERR1003759 HOXA1 ERR1003761 HOXA1 ERR1003754 HOXA1 ERR1003756 HOXA1 ERR1003758 HOXA1 ERR1003760 HOXA2 ERR195641 HOXA2 ERR195642 HOXA2 ERR195643 HOXA2 ERR195644 HOXA2 ERR194047 HOXA2 ERR194048 HOXA2 ERR194049 HOXA2 ERR1003802 HOXA2 ERR1003804 HOXA2 ERR1003806 HOXA2 ERR1003808 HOXA2 ERR1003810 HOXA2 ERR1003812 HOXA2 ERR1003814 HOXA2 ERR1003816 HOXA2 ERR1003803 HOXA2 ERR1003805 HOXA2 ERR1003807 HOXA2 ERR1003809 HOXA2 ERR1003811 HOXA2 ERR1003813 HOXA2 ERR1003815 HOXA2 ERR1003817 HOXA4 ERR1003819 HOXA4 ERR1003821 HOXA4 ERR1003823 HOXA4 ERR1003825 HOXA4 ERR1003818 HOXA4 ERR1003820 HOXA4 ERR1003822 HOXA4 ERR1003824 HOXA5 ERR1003827 HOXA5 ERR1003829 HOXA5 ERR1003831 HOXA5 ERR1003833 HOXA5 ERR1003834 HOXA5 ERR1003836 HOXA5 ERR1003838 HOXA5 ERR1003840 HOXA5 ERR1003826 HOXA5 ERR1003828 HOXA5 ERR1003830 HOXA5 ERR1003832 HOXA5 ERR1003835 HOXA5 ERR1003837 HOXA5 ERR1003839 HOXA5 ERR1003841 HOXA6 ERR1003842 HOXA6 ERR1003844 HOXA6 ERR1003846 HOXA6 ERR1003848 HOXA6 ERR1003843 HOXA6 ERR1003845 HOXA6 ERR1003847 HOXA6 ERR1003849 HOXA7 ERR1003850 HOXA7 ERR1003852 HOXA7 ERR1003854 HOXA7 ERR1003856 HOXA7 ERR1003851 HOXA7 ERR1003853 HOXA7 ERR1003855 HOXA7 ERR1003857 HOXA9 ERR1003859 HOXA9 ERR1003861 HOXA9 ERR1003863 HOXA9 ERR1003865 HOXA9 ERR1003858 HOXA9 ERR1003860 HOXA9 ERR1003862 HOXA9 ERR1003864 HOXB13 ERR195246 HOXB13 ERR195247 HOXB13 ERR195248 HOXB13 ERR1003874 HOXB13 ERR1003876 HOXB13 ERR1003878 HOXB13 ERR1003880 HOXB13 ERR1003875 HOXB13 ERR1003877 HOXB13 ERR1003879 HOXB13 ERR1003881 HOXB1 ERR1003866 HOXB1 ERR1003868 HOXB1 ERR1003870 HOXB1 ERR1003872 HOXB1 ERR1003867 HOXB1 ERR1003869 HOXB1 ERR1003871 HOXB1 ERR1003873 HOXB2 ERR195249 HOXB2 ERR195250 HOXB2 ERR195251 HOXB2 ERR195252 HOXB2 ERR1003882 HOXB2 ERR1003884 HOXB2 ERR1003886 HOXB2 ERR1003888 HOXB2 ERR1003883 HOXB2 ERR1003885 HOXB2 ERR1003887 HOXB2 ERR1003889 HOXB3 ERR195253 HOXB3 ERR195254 HOXB3 ERR195255 HOXB3 ERR195256 HOXB4 ERR1003891 HOXB4 ERR1003893 HOXB4 ERR1003895 HOXB4 ERR1003897 HOXB4 ERR1003890 HOXB4 ERR1003892 HOXB4 ERR1003894 HOXB4 ERR1003896 HOXB5 ERR195625 HOXB5 ERR195626 HOXB5 ERR195627 HOXB5 ERR195628 HOXB5 ERR1003898 HOXB5 ERR1003900 HOXB5 ERR1003902 HOXB5 ERR1003904 HOXB5 ERR1003907 HOXB5 ERR1003909 HOXB5 ERR1003911 HOXB5 ERR1003913 HOXB5 ERR1003899 HOXB5 ERR1003901 HOXB5 ERR1003903 HOXB5 ERR1003905 HOXB5 ERR1003908 HOXB5 ERR1003910 HOXB5 ERR1003912 HOXB6 ERR1003915 HOXB6 ERR1003917 HOXB6 ERR1003914 HOXB6 ERR1003916 HOXB7 ERR1003918 HOXB7 ERR1003920 HOXB7 ERR1003922 HOXB7 ERR1003924 HOXB7 ERR1003927 HOXB7 ERR1003929 HOXB7 ERR1003931 HOXB7 ERR1003933 HOXB7 ERR1003919 HOXB7 ERR1003921 HOXB7 ERR1003923 HOXB7 ERR1003925 HOXB7 ERR1003928 HOXB7 ERR1003930 HOXB7 ERR1003932 HOXB8 ERR1003934 HOXB8 ERR1003936 HOXB8 ERR1003938 HOXB8 ERR1003940 HOXB8 ERR1003935 HOXB8 ERR1003937 HOXB8 ERR1003939 HOXB8 ERR1003941 HOXB9 ERR1003943 HOXB9 ERR1003945 HOXB9 ERR1003947 HOXB9 ERR1003949 HOXB9 ERR1003942 HOXB9 ERR1003944 HOXB9 ERR1003946 HOXB9 ERR1003948 HOXC10 ERR195646 HOXC10 ERR195647 HOXC10 ERR195648 HOXC10 ERR195257 HOXC10 ERR195258 HOXC10 ERR195259 HOXC10 ERR195260 HOXC10 ERR1003950 HOXC10 ERR1003952 HOXC10 ERR1003954 HOXC10 ERR1003956 HOXC10 ERR1003959 HOXC10 ERR1003961 HOXC10 ERR1003963 HOXC10 ERR1003965 HOXC10 ERR1003951 HOXC10 ERR1003953 HOXC10 ERR1003955 HOXC10 ERR1003957 HOXC10 ERR1003958 HOXC10 ERR1003960 HOXC10 ERR1003962 HOXC10 ERR1003964 HOXC11 ERR188754 HOXC11 ERR188755 HOXC11 ERR188756 HOXC11 ERR188757 HOXC11 ERR194051 HOXC11 ERR194052 HOXC11 ERR194053 HOXC11 ERR1003967 HOXC11 ERR1003969 HOXC11 ERR1003971 HOXC11 ERR1003973 HOXC11 ERR1003974 HOXC11 ERR1003976 HOXC11 ERR1003978 HOXC11 ERR1003980 HOXC11 ERR1003966 HOXC11 ERR1003968 HOXC11 ERR1003970 HOXC11 ERR1003972 HOXC11 ERR1003975 HOXC11 ERR1003977 HOXC11 ERR1003979 HOXC11 ERR1003981 HOXC12 ERR195262 HOXC12 ERR195263 HOXC12 ERR195264 HOXC12 ERR1003982 HOXC12 ERR1003984 HOXC12 ERR1003986 HOXC12 ERR1003988 HOXC12 ERR1003983 HOXC12 ERR1003985 HOXC12 ERR1003987 HOXC12 ERR1003989 HOXC13 ERR195266 HOXC13 ERR195267 HOXC13 ERR195268 HOXC13 ERR1003990 HOXC13 ERR1003992 HOXC13 ERR1003994 HOXC13 ERR1003996 HOXC13 ERR1003991 HOXC13 ERR1003993 HOXC13 ERR1003995 HOXC13 ERR1003997 HOXC4 ERR1003999 HOXC4 ERR1004001 HOXC4 ERR1004003 HOXC4 ERR1004005 HOXC4 ERR1003998 HOXC4 ERR1004000 HOXC4 ERR1004002 HOXC4 ERR1004004 HOXC8 ERR1004006 HOXC8 ERR1004008 HOXC8 ERR1004010 HOXC8 ERR1004012 HOXC8 ERR1004007 HOXC8 ERR1004009 HOXC8 ERR1004011 HOXC8 ERR1004013 HOXC9 ERR1004014 HOXC9 ERR1004016 HOXC9 ERR1004018 HOXC9 ERR1004020 HOXC9 ERR1004015 HOXC9 ERR1004017 HOXC9 ERR1004019 HOXC9 ERR1004021 HOXD10 ERR1004030 HOXD10 ERR1004032 HOXD10 ERR1004034 HOXD10 ERR1004036 HOXD10 ERR1004039 HOXD10 ERR1004041 HOXD10 ERR1004043 HOXD10 ERR1004045 HOXD10 ERR1004031 HOXD10 ERR1004033 HOXD10 ERR1004035 HOXD10 ERR1004037 HOXD10 ERR1004040 HOXD10 ERR1004042 HOXD10 ERR1004044 HOXD11 ERR195271 HOXD11 ERR195272 HOXD11 ERR1004047 HOXD11 ERR1004049 HOXD11 ERR1004051 HOXD11 ERR1004053 HOXD11 ERR1004046 HOXD11 ERR1004048 HOXD11 ERR1004050 HOXD11 ERR1004052 HOXD12 ERR195274 HOXD12 ERR195275 HOXD12 ERR195276 HOXD12 ERR194216 HOXD12 ERR194217 HOXD12 ERR194218 HOXD12 ERR194219 HOXD12 ERR1004054 HOXD12 ERR1004056 HOXD12 ERR1004058 HOXD12 ERR1004060 HOXD12 ERR1004055 HOXD12 ERR1004057 HOXD12 ERR1004059 HOXD12 ERR1004061 HOXD13 ERR194886 HOXD13 ERR194887 HOXD13 ERR194888 HOXD13 ERR188758 HOXD13 ERR188759 HOXD13 ERR188760 HOXD13 ERR188761 HOXD13 ERR1004062 HOXD13 ERR1004064 HOXD13 ERR1004066 HOXD13 ERR1004068 HOXD13 ERR1004063 HOXD13 ERR1004065 HOXD13 ERR1004067 HOXD13 ERR1004069 HOXD1 ERR1004023 HOXD1 ERR1004025 HOXD1 ERR1004027 HOXD1 ERR1004029 HOXD1 ERR1004022 HOXD1 ERR1004024 HOXD1 ERR1004026 HOXD1 ERR1004028 HOXD3 ERR194699 HOXD3 ERR194700 HOXD3 ERR194701 HOXD3 ERR194702 HOXD3 ERR194703 HOXD3 ERR1004070 HOXD3 ERR1004072 HOXD3 ERR1004074 HOXD3 ERR1004076 HOXD3 ERR1004071 HOXD3 ERR1004073 HOXD3 ERR1004075 HOXD3 ERR1004077 HOXD4 ERR1004079 HOXD4 ERR1004081 HOXD4 ERR1004083 HOXD4 ERR1004085 HOXD4 ERR1004087 HOXD4 ERR1004089 HOXD4 ERR1004091 HOXD4 ERR1004093 HOXD4 ERR1004078 HOXD4 ERR1004080 HOXD4 ERR1004082 HOXD4 ERR1004084 HOXD4 ERR1004086 HOXD4 ERR1004088 HOXD4 ERR1004090 HOXD4 ERR1004092 HOXD8 ERR195279 HOXD8 ERR195280 HOXD8 ERR1004094 HOXD8 ERR1004096 HOXD8 ERR1004098 HOXD8 ERR1004100 HOXD8 ERR1004095 HOXD8 ERR1004097 HOXD8 ERR1004099 HOXD8 ERR1004101 HOXD9 ERR195651 HOXD9 ERR195652 HOXD9 ERR1004103 HOXD9 ERR1004105 HOXD9 ERR1004107 HOXD9 ERR1004109 HOXD9 ERR1004111 HOXD9 ERR1004113 HOXD9 ERR1004102 HOXD9 ERR1004104 HOXD9 ERR1004106 HOXD9 ERR1004108 HOXD9 ERR1004110 HOXD9 ERR1004112 HSF1 ERR195281 HSF1 ERR195282 HSF1 ERR195283 HSF1 ERR195284 HSF1 ERR185033 HSF1 ERR185034 HSF1 ERR185035 HSF1 ERR1004114 HSF1 ERR1004116 HSF1 ERR1004118 HSF1 ERR1004120 HSF1 ERR1004123 HSF1 ERR1004125 HSF1 ERR1004127 HSF1 ERR1004129 HSF1 ERR1004115 HSF1 ERR1004117 HSF1 ERR1004119 HSF1 ERR1004121 HSF1 ERR1004122 HSF1 ERR1004124 HSF1 ERR1004126 HSF1 ERR1004128 HSF2 ERR194902 HSF2 ERR194903 HSF2 ERR194904 HSF2 ERR1004130 HSF2 ERR1004132 HSF2 ERR1004134 HSF2 ERR1004136 HSF2 ERR1004139 HSF2 ERR1004141 HSF2 ERR1004143 HSF2 ERR1004145 HSF2 ERR1004131 HSF2 ERR1004133 HSF2 ERR1004135 HSF2 ERR1004137 HSF2 ERR1004138 HSF2 ERR1004140 HSF2 ERR1004142 HSF2 ERR1004144 HSF4 ERR195285 HSF4 ERR195286 HSF4 ERR195287 HSF4 ERR195288 HSF4 ERR1004146 HSF4 ERR1004148 HSF4 ERR1004150 HSF4 ERR1004152 HSF4 ERR1004147 HSF4 ERR1004149 HSF4 ERR1004151 HSF4 ERR1004153 HSF5 ERR1004154 HSF5 ERR1004156 HSF5 ERR1004158 HSF5 ERR1004160 HSF5 ERR1004155 HSF5 ERR1004157 HSF5 ERR1004159 HSF5 ERR1004161 HSFY1 ERR1004162 HSFY1 ERR1004164 HSFY1 ERR1004166 HSFY1 ERR1004168 HSFY1 ERR1004163 HSFY1 ERR1004165 HSFY1 ERR1004167 HSFY1 ERR1004169 HSFY2 ERR195289 HSFY2 ERR195290 HSFY2 ERR195291 HSFY2 ERR195292 HSFY2 ERR1004171 HSFY2 ERR1004173 HSFY2 ERR1004175 HSFY2 ERR1004177 HSFY2 ERR1004170 HSFY2 ERR1004172 HSFY2 ERR1004174 HSFY2 ERR1004176 ID4 ERR194891 ID4 ERR194892 IRF2 ERR1004178 IRF2 ERR1004180 IRF2 ERR1004182 IRF2 ERR1004184 IRF2 ERR1004179 IRF2 ERR1004181 IRF2 ERR1004183 IRF2 ERR1004185 IRF3 ERR194367 IRF3 ERR194368 IRF3 ERR194369 IRF3 ERR194370 IRF3 ERR194371 IRF3 ERR1004186 IRF3 ERR1004188 IRF3 ERR1004190 IRF3 ERR1004192 IRF3 ERR1004194 IRF3 ERR1004196 IRF3 ERR1004198 IRF3 ERR1004200 IRF3 ERR1004189 IRF3 ERR1004191 IRF3 ERR1004193 IRF3 ERR1004199 IRF3 ERR1004201 IRF4 ERR193706 IRF4 ERR193707 IRF4 ERR193708 IRF4 ERR193709 IRF4 ERR1004202 IRF4 ERR1004204 IRF4 ERR1004206 IRF4 ERR1004208 IRF4 ERR1004203 IRF4 ERR1004205 IRF4 ERR1004207 IRF4 ERR1004209 IRF5 ERR193711 IRF5 ERR193712 IRF5 ERR193713 IRF5 ERR1004210 IRF5 ERR1004212 IRF5 ERR1004214 IRF5 ERR1004216 IRF5 ERR1004218 IRF5 ERR1004220 IRF5 ERR1004222 IRF5 ERR1004224 IRF5 ERR1004211 IRF5 ERR1004213 IRF5 ERR1004215 IRF5 ERR1004217 IRF5 ERR1004219 IRF5 ERR1004221 IRF5 ERR1004223 IRF5 ERR1004225 IRF6 ERR1004226 IRF6 ERR1004228 IRF6 ERR1004230 IRF6 ERR1004232 IRF6 ERR1004234 IRF6 ERR1004236 IRF6 ERR1004238 IRF6 ERR1004240 IRF6 ERR1004227 IRF6 ERR1004229 IRF6 ERR1004231 IRF6 ERR1004233 IRF6 ERR1004239 IRF6 ERR1004241 IRF7 ERR188763 IRF7 ERR188764 IRF7 ERR188765 IRF7 ERR1004242 IRF7 ERR1004244 IRF7 ERR1004246 IRF7 ERR1004248 IRF7 ERR1004245 IRF8 ERR195653 IRF8 ERR195654 IRF8 ERR195655 IRF8 ERR195656 IRF8 ERR193808 IRF8 ERR193809 IRF8 ERR1004251 IRF8 ERR1004253 IRF8 ERR1004255 IRF8 ERR1004257 IRF8 ERR1004258 IRF8 ERR1004260 IRF8 ERR1004262 IRF8 ERR1004264 IRF8 ERR1004250 IRF8 ERR1004252 IRF8 ERR1004254 IRF8 ERR1004256 IRF8 ERR1004259 IRF8 ERR1004261 IRF8 ERR1004263 IRF8 ERR1004265 IRF9 ERR195006 IRF9 ERR195007 IRF9 ERR195008 IRF9 ERR1004267 IRF9 ERR1004269 IRF9 ERR1004271 IRF9 ERR1004273 IRF9 ERR1004266 IRF9 ERR1004268 IRF9 ERR1004270 IRF9 ERR1004272 IRX1 ERR1004275 IRX1 ERR1004277 IRX1 ERR1004279 IRX1 ERR1004281 IRX1 ERR1004274 IRX1 ERR1004276 IRX1 ERR1004278 IRX1 ERR1004280 IRX2 ERR194372 IRX2 ERR194373 IRX2 ERR194374 IRX2 ERR194375 IRX2 ERR194376 IRX2 ERR194377 IRX3 ERR195659 IRX3 ERR195660 IRX3 ERR1004283 IRX3 ERR1004285 IRX3 ERR1004287 IRX3 ERR1004289 IRX3 ERR1004282 IRX3 ERR1004284 IRX3 ERR1004286 IRX3 ERR1004288 IRX5 ERR194769 IRX5 ERR194770 IRX5 ERR194771 IRX5 ERR194772 IRX5 ERR194773 IRX5 ERR1004290 IRX5 ERR1004292 IRX5 ERR1004294 IRX5 ERR1004296 IRX5 ERR1004291 IRX5 ERR1004293 IRX5 ERR1004295 IRX5 ERR1004297 ISL1 ERR1004299 ISL1 ERR1004301 ISL1 ERR1004303 ISL1 ERR1004305 ISL1 ERR1004307 ISL1 ERR1004309 ISL1 ERR1004311 ISL1 ERR1004313 ISL1 ERR1004298 ISL1 ERR1004300 ISL1 ERR1004302 ISL1 ERR1004304 ISL1 ERR1004306 ISL1 ERR1004308 ISL1 ERR1004310 ISL1 ERR1004312 ISL2 ERR194378 ISL2 ERR194379 ISL2 ERR194380 ISL2 ERR194381 ISL2 ERR194382 ISL2 ERR194383 ISL2 ERR1004315 ISL2 ERR1004317 ISL2 ERR1004319 ISL2 ERR1004321 ISL2 ERR1004314 ISL2 ERR1004316 ISL2 ERR1004318 ISL2 ERR1004320 ISX ERR195293 ISX ERR195294 ISX ERR195295 ISX ERR195296 ISX ERR193810 ISX ERR193811 ISX ERR193812 ISX ERR193813 ISX ERR1004323 ISX ERR1004325 ISX ERR1004327 ISX ERR1004329 ISX ERR1004330 ISX ERR1004332 ISX ERR1004334 ISX ERR1004336 ISX ERR1004322 ISX ERR1004324 ISX ERR1004326 ISX ERR1004328 ISX ERR1004331 ISX ERR1004333 ISX ERR1004335 ISX ERR1004337 JDP2 ERR195662 JDP2 ERR195663 JDP2 ERR195664 JDP2 ERR188768 JDP2 ERR188769 JDP2 ERR193815 JDP2 ERR193816 JDP2 ERR193817 JDP2 ERR1004339 JDP2 ERR1004341 JDP2 ERR1004343 JDP2 ERR1004345 JDP2 ERR1004346 JDP2 ERR1004348 JDP2 ERR1004350 JDP2 ERR1004352 JDP2 ERR1004338 JDP2 ERR1004340 JDP2 ERR1004342 JDP2 ERR1004344 JDP2 ERR1004347 JDP2 ERR1004349 JDP2 ERR1004351 JDP2 ERR1004353 JUNB ERR1004369 JUNB ERR1004362 JUNB ERR1004364 JUNB ERR1004366 JUNB ERR1004368 JUND ERR1004370 JUND ERR1004372 JUND ERR1004374 JUND ERR1004376 JUND ERR1004371 JUND ERR1004373 JUND ERR1004375 JUND ERR1004377 JUN ERR1004356 JUN ERR1004358 JUN ERR1004360 JUN ERR1004359 JUN ERR1004361 KLF10 ERR1004378 KLF10 ERR1004380 KLF10 ERR1004382 KLF10 ERR1004384 KLF10 ERR1004379 KLF10 ERR1004381 KLF10 ERR1004383 KLF10 ERR1004385 KLF11 ERR1004387 KLF11 ERR1004389 KLF11 ERR1004391 KLF11 ERR1004393 KLF11 ERR1004386 KLF11 ERR1004388 KLF11 ERR1004390 KLF11 ERR1004392 KLF12 ERR195667 KLF12 ERR195668 KLF12 ERR1004395 KLF12 ERR1004397 KLF12 ERR1004399 KLF12 ERR1004401 KLF12 ERR1004394 KLF12 ERR1004396 KLF12 ERR1004398 KLF12 ERR1004400 KLF13 ERR193818 KLF13 ERR193819 KLF13 ERR193820 KLF13 ERR193821 KLF13 ERR1004402 KLF13 ERR1004404 KLF13 ERR1004406 KLF13 ERR1004408 KLF13 ERR1004410 KLF13 ERR1004412 KLF13 ERR1004414 KLF13 ERR1004416 KLF13 ERR1004403 KLF13 ERR1004405 KLF13 ERR1004407 KLF13 ERR1004409 KLF13 ERR1004411 KLF13 ERR1004413 KLF13 ERR1004415 KLF13 ERR1004417 KLF14 ERR194055 KLF14 ERR194056 KLF14 ERR194057 KLF14 ERR1004418 KLF14 ERR1004420 KLF14 ERR1004422 KLF14 ERR1004424 KLF14 ERR1004419 KLF14 ERR1004421 KLF14 ERR1004423 KLF14 ERR1004425 KLF15 ERR1004426 KLF15 ERR1004428 KLF15 ERR1004430 KLF15 ERR1004432 KLF15 ERR1004434 KLF15 ERR1004436 KLF15 ERR1004438 KLF15 ERR1004440 KLF15 ERR1004427 KLF15 ERR1004429 KLF15 ERR1004431 KLF15 ERR1004433 KLF15 ERR1004435 KLF15 ERR1004437 KLF15 ERR1004439 KLF15 ERR1004441 KLF16 ERR194059 KLF16 ERR194060 KLF16 ERR194061 KLF16 ERR1004442 KLF16 ERR1004444 KLF16 ERR1004446 KLF16 ERR1004448 KLF16 ERR1004443 KLF16 ERR1004445 KLF16 ERR1004447 KLF16 ERR1004449 KLF17 ERR1004451 KLF17 ERR1004453 KLF17 ERR1004450 KLF17 ERR1004452 KLF2 ERR1004454 KLF2 ERR1004456 KLF2 ERR1004458 KLF2 ERR1004460 KLF2 ERR1004455 KLF2 ERR1004457 KLF2 ERR1004459 KLF2 ERR1004461 KLF3 ERR1004464 KLF3 ERR1004466 KLF3 ERR1004468 KLF3 ERR1004463 KLF3 ERR1004465 KLF3 ERR1004467 KLF3 ERR1004469 KLF4 ERR1004470 KLF4 ERR1004472 KLF4 ERR1004474 KLF4 ERR1004476 KLF4 ERR1004471 KLF4 ERR1004473 KLF4 ERR1004475 KLF4 ERR1004477 KLF5 ERR1004479 KLF5 ERR1004481 KLF5 ERR1004483 KLF5 ERR1004485 KLF5 ERR1004478 KLF5 ERR1004480 KLF5 ERR1004482 KLF5 ERR1004484 KLF6 ERR1004487 KLF6 ERR1004489 KLF6 ERR1004491 KLF6 ERR1004493 KLF6 ERR1004486 KLF6 ERR1004488 KLF6 ERR1004490 KLF6 ERR1004492 LBX2 ERR195297 LBX2 ERR195298 LBX2 ERR195299 LBX2 ERR195300 LBX2 ERR1004495 LBX2 ERR1004497 LBX2 ERR1004499 LBX2 ERR1004501 LBX2 ERR1004498 LBX2 ERR1004500 LEF1 ERR188772 LEF1 ERR188773 LEF1 ERR1004503 LEF1 ERR1004505 LEF1 ERR1004507 LEF1 ERR1004509 LEF1 ERR1004511 LEF1 ERR1004513 LEF1 ERR1004515 LEF1 ERR1004517 LEF1 ERR1004502 LEF1 ERR1004504 LEF1 ERR1004506 LEF1 ERR1004508 LEF1 ERR1004510 LEF1 ERR1004512 LEF1 ERR1004514 LEF1 ERR1004516 LHX1 ERR1004519 LHX1 ERR1004521 LHX1 ERR1004523 LHX1 ERR1004525 LHX1 ERR1004518 LHX1 ERR1004520 LHX1 ERR1004522 LHX1 ERR1004524 LHX2 ERR194386 LHX2 ERR194387 LHX2 ERR194388 LHX2 ERR194389 LHX4 ERR195677 LHX4 ERR195678 LHX4 ERR195679 LHX4 ERR195680 LHX4 ERR1004526 LHX4 ERR1004528 LHX4 ERR1004530 LHX4 ERR1004532 LHX4 ERR1004535 LHX4 ERR1004537 LHX4 ERR1004539 LHX4 ERR1004541 LHX4 ERR1004527 LHX4 ERR1004529 LHX4 ERR1004531 LHX4 ERR1004533 LHX4 ERR1004534 LHX4 ERR1004536 LHX4 ERR1004538 LHX4 ERR1004540 LHX5 ERR1004543 LHX5 ERR1004545 LHX5 ERR1004547 LHX5 ERR1004549 LHX5 ERR1004542 LHX5 ERR1004544 LHX5 ERR1004546 LHX5 ERR1004548 LHX6 ERR194063 LHX6 ERR194064 LHX6 ERR194065 LHX6 ERR1004551 LHX6 ERR1004553 LHX6 ERR1004555 LHX6 ERR1004557 LHX6 ERR1004550 LHX6 ERR1004552 LHX6 ERR1004554 LHX6 ERR1004556 LHX8 ERR194390 LHX8 ERR194391 LHX8 ERR194392 LHX8 ERR194393 LHX8 ERR194394 LHX8 ERR1004558 LHX8 ERR1004560 LHX8 ERR1004562 LHX8 ERR1004564 LHX8 ERR1004559 LHX8 ERR1004561 LHX8 ERR1004563 LHX8 ERR1004565 LHX9 ERR195302 LHX9 ERR195303 LHX9 ERR195304 LHX9 ERR1004567 LHX9 ERR1004569 LHX9 ERR1004571 LHX9 ERR1004573 LHX9 ERR1004575 LHX9 ERR1004577 LHX9 ERR1004579 LHX9 ERR1004581 LHX9 ERR1004566 LHX9 ERR1004568 LHX9 ERR1004570 LHX9 ERR1004572 LHX9 ERR1004574 LHX9 ERR1004576 LHX9 ERR1004578 LHX9 ERR1004580 LIN28B ERR1004583 LIN28B ERR1004585 LIN28B ERR1004587 LIN28B ERR1004589 LIN28B ERR1004582 LIN28B ERR1004584 LIN28B ERR1004586 LIN28B ERR1004588 LMX1A ERR195669 LMX1A ERR195670 LMX1A ERR195671 LMX1A ERR195672 LMX1A ERR1004590 LMX1A ERR1004592 LMX1A ERR1004594 LMX1A ERR1004596 LMX1A ERR1004591 LMX1A ERR1004593 LMX1A ERR1004595 LMX1A ERR1004597 LMX1B ERR195673 LMX1B ERR195674 LMX1B ERR195675 LMX1B ERR195676 LMX1B ERR193824 LMX1B ERR193825 LMX1B ERR1004599 LMX1B ERR1004601 LMX1B ERR1004603 LMX1B ERR1004605 LMX1B ERR1004606 LMX1B ERR1004608 LMX1B ERR1004610 LMX1B ERR1004612 LMX1B ERR1004598 LMX1B ERR1004600 LMX1B ERR1004602 LMX1B ERR1004604 LMX1B ERR1004607 LMX1B ERR1004609 LMX1B ERR1004611 LMX1B ERR1004613 MAFA ERR1004630 MAFA ERR1004632 MAFA ERR1004634 MAFA ERR1004636 MAFA ERR1004631 MAFA ERR1004633 MAFA ERR1004635 MAFA ERR1004637 MAFB ERR185042 MAFB ERR185043 MAFB ERR185044 MAFF ERR195683 MAFF ERR195684 MAFF ERR1004639 MAFF ERR1004641 MAFF ERR1004643 MAFF ERR1004645 MAFF ERR1004647 MAFF ERR1004649 MAFF ERR1004651 MAFF ERR1004653 MAFF ERR1004638 MAFF ERR1004640 MAFF ERR1004642 MAFF ERR1004644 MAFF ERR1004646 MAFF ERR1004648 MAFF ERR1004650 MAFF ERR1004652 MAFG ERR194396 MAFG ERR194397 MAFG ERR194398 MAFG ERR194399 MAFG ERR194400 MAFG ERR1004655 MAFG ERR1004657 MAFG ERR1004659 MAFG ERR1004661 MAFG ERR1004663 MAFG ERR1004665 MAFG ERR1004667 MAFG ERR1004669 MAFG ERR1004654 MAFG ERR1004656 MAFG ERR1004658 MAFG ERR1004660 MAFG ERR1004662 MAFG ERR1004664 MAFG ERR1004666 MAFG ERR1004668 MAFK ERR194402 MAFK ERR194404 MAFK ERR194405 MAFK ERR194406 MAFK ERR194407 MAFK ERR248789 MAFK ERR193827 MAFK ERR193828 MAFK ERR193829 MAF ERR1004615 MAF ERR1004617 MAF ERR1004619 MAF ERR1004621 MAF ERR1004622 MAF ERR1004624 MAF ERR1004626 MAF ERR1004628 MAF ERR1004614 MAF ERR1004616 MAF ERR1004618 MAF ERR1004620 MAF ERR1004623 MAF ERR1004625 MAF ERR1004627 MAF ERR1004629 MAX ERR195305 MAX ERR195306 MAX ERR195307 MAX ERR195308 MAX ERR1004671 MAX ERR1004673 MAX ERR1004675 MAX ERR1004677 MAX ERR1004679 MAX ERR1004681 MAX ERR1004683 MAX ERR1004685 MAX ERR1004670 MAX ERR1004672 MAX ERR1004674 MAX ERR1004676 MAX ERR1004678 MAX ERR1004680 MAX ERR1004682 MAX ERR1004684 MBNL2 ERR1004686 MBNL2 ERR1004688 MBNL2 ERR1004690 MBNL2 ERR1004692 MBNL2 ERR1004687 MBNL2 ERR1004689 MBNL2 ERR1004691 MBNL2 ERR1004693 MEF2A ERR194776 MEF2A ERR194777 MEF2A ERR194778 MEF2B ERR193832 MEF2B ERR193833 MEF2B ERR1004695 MEF2B ERR1004697 MEF2B ERR1004699 MEF2B ERR1004701 MEF2B ERR1004705 MEF2B ERR1004707 MEF2B ERR1004709 MEF2B ERR1004694 MEF2B ERR1004696 MEF2B ERR1004698 MEF2B ERR1004700 MEF2B ERR1004702 MEF2B ERR1004704 MEF2B ERR1004706 MEF2B ERR1004708 MEF2C ERR1004711 MEF2C ERR1004713 MEF2C ERR1004715 MEF2C ERR1004717 MEF2C ERR1004710 MEF2C ERR1004712 MEF2C ERR1004714 MEF2C ERR1004716 MEF2D ERR195309 MEF2D ERR195310 MEF2D ERR195311 MEF2D ERR195312 MEF2D ERR1004718 MEF2D ERR1004720 MEF2D ERR1004722 MEF2D ERR1004724 MEF2D ERR1004719 MEF2D ERR1004721 MEF2D ERR1004723 MEF2D ERR1004725 MEIS1 ERR194632 MEIS1 ERR194633 MEIS1 ERR194634 MEIS1 ERR194635 MEIS1 ERR194636 MEIS1 ERR194637 MEIS2 ERR194704 MEIS2 ERR194705 MEIS2 ERR194706 MEIS2 ERR194707 MEIS2 ERR194708 MEIS2 ERR185037 MEIS2 ERR185038 MEIS2 ERR1004727 MEIS2 ERR1004729 MEIS2 ERR1004731 MEIS2 ERR1004733 MEIS2 ERR1004734 MEIS2 ERR1004736 MEIS2 ERR1004738 MEIS2 ERR1004740 MEIS2 ERR1004726 MEIS2 ERR1004728 MEIS2 ERR1004730 MEIS2 ERR1004732 MEIS2 ERR1004735 MEIS2 ERR1004737 MEIS2 ERR1004739 MEIS2 ERR1004741 MEIS3 ERR194075 MEIS3 ERR194076 MEIS3 ERR194077 MEIS3 ERR195313 MEIS3 ERR195314 MEIS3 ERR195315 MEIS3 ERR195316 MEIS3 ERR1004743 MEIS3 ERR1004745 MEIS3 ERR1004742 MEIS3 ERR1004744 MEOX1 ERR195009 MEOX1 ERR195010 MEOX1 ERR195011 MEOX1 ERR195012 MEOX1 ERR1004746 MEOX1 ERR1004748 MEOX1 ERR1004750 MEOX1 ERR1004752 MEOX1 ERR1004747 MEOX1 ERR1004749 MEOX1 ERR1004751 MEOX1 ERR1004753 MEOX2 ERR195690 MEOX2 ERR195691 MEOX2 ERR195692 MEOX2 ERR194408 MEOX2 ERR194409 MEOX2 ERR194410 MEOX2 ERR194411 MEOX2 ERR194412 MEOX2 ERR194413 MEOX2 ERR1004754 MEOX2 ERR1004756 MEOX2 ERR1004758 MEOX2 ERR1004760 MEOX2 ERR1004755 MEOX2 ERR1004757 MEOX2 ERR1004759 MEOX2 ERR1004761 MESP1 ERR195320 MESP2 ERR1004763 MESP2 ERR1004765 MESP2 ERR1004767 MESP2 ERR1004769 MGA ERR195322 MGA ERR195323 MGA ERR195324 MIXL1 ERR193834 MIXL1 ERR193835 MIXL1 ERR193836 MIXL1 ERR193837 MIXL1 ERR1004771 MIXL1 ERR1004773 MIXL1 ERR1004775 MIXL1 ERR1004777 MIXL1 ERR1004770 MIXL1 ERR1004772 MIXL1 ERR1004774 MIXL1 ERR1004776 MLXIPL ERR193840 MLXIPL ERR193841 MLX ERR194852 MLX ERR194853 MLX ERR194854 MLX ERR194837 MLX ERR194838 MLX ERR194839 MLX ERR194840 MLX ERR1004778 MLX ERR1004780 MLX ERR1004782 MLX ERR1004784 MLX ERR1004787 MLX ERR1004789 MLX ERR1004791 MLX ERR1004793 MLX ERR1004779 MLX ERR1004781 MLX ERR1004783 MLX ERR1004785 MLX ERR1004786 MLX ERR1004788 MLX ERR1004790 MLX ERR1004792 MNT ERR195326 MNT ERR195327 MNT ERR195328 MNX1 ERR1004794 MNX1 ERR1004796 MNX1 ERR1004798 MNX1 ERR1004800 MNX1 ERR1004795 MNX1 ERR1004797 MNX1 ERR1004799 MNX1 ERR1004801 MSC ERR185041 MSC ERR1004802 MSC ERR1004804 MSC ERR1004806 MSC ERR1004808 MSC ERR1004810 MSC ERR1004812 MSC ERR1004814 MSC ERR1004816 MSC ERR1004803 MSC ERR1004805 MSC ERR1004807 MSC ERR1004809 MSC ERR1004811 MSC ERR1004813 MSC ERR1004815 MSC ERR1004817 MSGN1 ERR1004819 MSGN1 ERR1004821 MSGN1 ERR1004823 MSGN1 ERR1004825 MSGN1 ERR1004818 MSGN1 ERR1004820 MSGN1 ERR1004822 MSGN1 ERR1004824 MSX1 ERR194415 MSX1 ERR194416 MSX1 ERR194417 MSX1 ERR194418 MSX1 ERR194419 MSX1 ERR193843 MSX1 ERR193844 MSX1 ERR193845 MSX1 ERR1004826 MSX1 ERR1004828 MSX1 ERR1004830 MSX1 ERR1004832 MSX1 ERR1004834 MSX1 ERR1004836 MSX1 ERR1004838 MSX1 ERR1004840 MSX1 ERR1004827 MSX1 ERR1004829 MSX1 ERR1004831 MSX1 ERR1004833 MSX1 ERR1004835 MSX1 ERR1004837 MSX1 ERR1004839 MSX1 ERR1004841 MSX2 ERR195014 MSX2 ERR195015 MSX2 ERR195016 MSX2 ERR1004842 MSX2 ERR1004844 MSX2 ERR1004846 MSX2 ERR1004848 MSX2 ERR1004843 MSX2 ERR1004845 MSX2 ERR1004847 MSX2 ERR1004849 MSX3 ERR185045 MSX3 ERR185046 MSX3 ERR185047 MTF1 ERR195332 MTF1 ERR1004850 MTF1 ERR1004852 MTF1 ERR1004854 MTF1 ERR1004856 MTF1 ERR1004853 MTF1 ERR1004855 MTF1 ERR1004857 MYBL1 ERR194066 MYBL1 ERR194067 MYBL1 ERR194068 MYBL1 ERR194069 MYBL2 ERR188775 MYBL2 ERR188776 MYBL2 ERR
Yaqiao-Li
YozonChen
Hi Team,
Recently I meet a problem when using the dataset of HT-SELEX motifs. A single motif in HT-SELEX datset in the factorbook database has two different names from the two download resource:
For example, in the file all-selex-motifs.meme.gz downloaded from HT-SELEX Catalog, there is a motif named "ERR173155", but there is no information about the Transcription Factor for this motif(usually in some databases like JASPAR, the TF info will be contained in the motif name).
Actually, it is the first motif of CTCF, if we downloaded by click the "export motif(MEME)" button on this webpage https://www.factorbook.org/tf/human/CTCF/deeplearnedselexmotif, this motif has got a new name "Jolma-2013".
Is there a special reason for setting different names for the same motif?
Another question related is, do you have a table for looking up the Transcription factor name of the motif? I downloaded the and found some motifs as candidates for the next step of our research, but get stuck here because it is hard to find out which transcription factor the motifs belong to.
For example, by directly searching with the name "ERR173155" in the database, we can't get the right result. By searching with the matrix, it will match some similar motifs but not exactly the same one. May I get some suggestions from you on how to find out the TF of each motif in the HT-SELEX catalog?
Thank you! Looking forward to your reply!