Closed dioncst closed 4 years ago
Yes, you can input your interested genes to "runScAnnotation" function by the argument "show.features". Using help(runScAnnotation) can get more detailed information.
Thank you for your quick reply. This is a really wonderful package. Also, I saw "cnv.ref.data" argument. I'm wondering how can we use our own normal reference data(10X)? Can you give some examples?
The cnv.ref.data
can be set as a count matrix of gene by cell. The row names are genes' symbol, and the column names are cells' label (such as "Normal1", "Normal2", etc). And cnv.referAdjMat
can be set as NULL
or a SNN matrix of reference data.
Can we set personalized marker genes showed in part 3.1 Markers expression profile ?