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wguo-research / scCancer

A package for automated processing of single cell RNA-seq data in cancer
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Where to put the normal cells for scCancer to run inferCNV #2

Closed Puriney closed 4 years ago

Puriney commented 4 years ago

Hello, The inferCNV requires a profile of normal cells as the baseline / reference to infer CNVs for single cells. I did not find a way to feed this required input for inferCNV, though I noticed inferCNV was called by scCancer. Could you tell me more details about how scCancer feeds inputs to inferCNV?

wguo-research commented 4 years ago

Just like the another issue, we will add an interface for the CNV reference data in next version.