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wguo-research / scCancer

A package for automated processing of single cell RNA-seq data in cancer
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How to get the infercnv heatmap？ #23

Closed MMriran closed 4 years ago

MMriran commented 4 years ago 
 Hi，thank your for your valuable package. I had a question about the “runmalignancy” function. As you described at the wiki package,  the “runmalignancy” function was based on the infercnv, then can we get a  heatmap plot just like ‘infercnv’ package？
wguo-research commented 4 years ago

The file inferCNV-observation.txt in the result folder malignancy/ records the predicted CNV matrix. You can use it to plot a heatmap.