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wguo-research / scCancer

A package for automated processing of single cell RNA-seq data in cancer
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how to prepare the ` cnv.referAdjMat` #24

Open hzongyao opened 3 years ago

hzongyao commented 3 years ago

I wonder how to prepare the cnv.referAdjMat if I provide normal sample expression matrix by cnv.ref.data parameter ? Thank you !

wguo-research commented 3 years ago

You can run your normal sample data by Seurat pipeline, and use the generated SNN matrix (seurat_obj@graphs$RNA_snn) as the cnv.referAdjMat.