A package for automated processing of single cell RNA-seq data in cancer
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Dear developers of scCancer, error in Run scAnnotation: [2021-04-25 21:26:54] START: RUN scAnnotation - Warning in 'prepareSeurat': Cannot find the raw data, and use the filtered data instead. [2021-04-25 21:26:54] -----: data preparation Error in `.rowNamesDF<-`(x, value = value) : missing values in 'row.names' are not allowed #32
Dear developers, I encountered an error in using scCancer in the step of Run scAnnotation. The 10x data I used was generated by generate10x function. The error was shown as below:
Run scAnnotation
anno.results <- runScAnnotation(
dataPath = dataPath,
statPath = statPath,
savePath = savePath,
authorName = authorName,
sampleName = sampleName,
geneSet.method = "GSVA" # or "GSVA"
)
[2021-04-25 21:26:54] START: RUN scAnnotation
Warning in 'prepareSeurat': Cannot find the raw data, and use the filtered data instead.
[2021-04-25 21:26:54] -----: data preparation
Error in .rowNamesDF<-(x, value = value) :
missing values in 'row.names' are not allowed
Could you please help me solve the problem?
Looking forward to your reply.
Sincerely.
Dear developers, I encountered an error in using scCancer in the step of Run scAnnotation. The 10x data I used was generated by generate10x function. The error was shown as below:
Could you please help me solve the problem? Looking forward to your reply. Sincerely.