wguo-research / scCancer

A package for automated processing of single cell RNA-seq data in cancer
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Analysis of "cellranger multi" output #36

Open HeyLifeHD opened 2 years ago

HeyLifeHD commented 2 years ago

Dear scCancer authors,

I would be very interested to use your tool to analyze our 10X scRNAseq data. Yet, we are working with hashed, multiplexed data that needs to be processed with the cellranger multi command available in cellranger v.6. I would have no problem restructuring the files to match your requirements, yet I think raw feature and barcode information is only available for the multiplexed data.

Do you have a solution to work around this problem?

Best regards,

Joschka