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wguo-research / scCancer

A package for automated processing of single cell RNA-seq data in cancer
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ERROR #41

Open mabaoweireadingene opened 11 months ago

mabaoweireadingene commented 11 months ago

[2023-08-31 16:57:15] START: RUN scStatistics [2023-08-31 16:57:15] -----: data preparation [2023-08-31 16:58:43] -----: cell calling [2023-08-31 16:59:31] -----: nUMI & nGene distribution plot [2023-08-31 16:59:32] -----: mito & ribo & diss distribution plot [2023-08-31 16:59:34] -----: gene statistics Error in .subscript.2ary(x, , j, drop = TRUE) : subscript out of bounds Calls: runScStatistics -> getNcell -> [ -> [ -> .subscript.2ary In addition: Warning message: In min(outliers) : no non-missing arguments to min; returning Inf Execution halted

czythu commented 11 months ago

Thank you for using scCancer software. We think that there is a conflict in the version of your R packages. May I ask if you can provide the test data you used, so that we can assist you with the testing? In addition, you can try using our updated software scCancer2 (http://lifeome.net/software/sccancer2/). In the document, we provide several versions of the R environment that have been tested and available, and explain the version issues of common dependencies.