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wguo-research / scCancer

A package for automated processing of single cell RNA-seq data in cancer
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about python module for malignant cell detection mentioned in scCancer2 #42

Open xflicsu opened 6 months ago

xflicsu commented 6 months ago

Congratulation for your updated version of scCancer2! I wonder whether the model is suitable to identify malignant cell from gastric cancer? The scCancer2 provided the jupyter and model. But the two web links do not work(Figure4.ipynb, sc_xgboost_alldata.model) So, could you update those files. Thanks!

czythu commented 4 months ago

Sorry for the late reply. We have updated the module in https://github.com/czythu/scCancer/tree/master/inst/txt/sc_xgboost.model and https://github.com/czythu/scCancer/blob/master/vignettes/malig-pred.ipynb