wguo-research / scCancer

A package for automated processing of single cell RNA-seq data in cancer
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New Feature request: UMAP #6

Closed Puriney closed 4 years ago

Puriney commented 4 years ago

https://github.com/wguo-research/scCancer/blob/c6078eacc2bf1ad958886c39b15e50fee92df7e6/R/scAnnotation.R#L168-L170

Could you insert the runUMAP function when running Seurat?

wguo-research commented 4 years ago

Yes, UMAP is also one of the updates in our new version scCancer, which will be committed soon.

Puriney commented 4 years ago

https://github.com/wguo-research/scCancer/blob/3f9eb9e878531d588594a132f00d60d6d38506c8/R/scAnnotation.R#L227