wikipathways GPML2RDF issues

wikipathways / GPML2RDF

GPML2RDF converter

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issues

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"Neutralized" InChIKey in the WPRDF

#68 egonw closed 4 years ago
6
identify the shapes for which to develop ShEX

#67 egonw opened 5 years ago
7
Service Description for sparql.wikipathways.org

#66 egonw opened 5 years ago
3
update VoID header file to include link sets

#65 egonw closed 5 years ago
1
in the RDF the things Protein should also be typed GeneProduct

#64 egonw opened 5 years ago
0
Update the VoID header file

#63 egonw closed 5 years ago
0
Unit test for Wikidata as Protein/geneProduct ID

#62 DeniseSl22 closed 5 years ago
3
update PV dependencies to support MIM_TRANSLOCATION

#61 egonw opened 5 years ago
0
stop typing interactions as multiple type, but only the most specific

#60 egonw opened 5 years ago
1
Update mavenisation build

#59 DeniseSl22 closed 5 years ago
1
update of interaction types

#58 egonw opened 5 years ago
3
Script that downloads for monthly release should use different Jenkins job

#57 egonw closed 5 years ago
10
Add Rhea IDs to RDF

#56 DeniseSl22 closed 5 years ago
12
check needs to Linked Data readiness

#55 egonw opened 5 years ago
0
link to Reactome RDF

#54 egonw opened 5 years ago
0
WP vocabulary Pathway node type?

#53 mkutmon opened 6 years ago
1
Add enzymes/genes/proteins from a group to an interaction

#52 DeniseSl22 opened 6 years ago
0
update VoID to have link to external data sets we have bdb:xxx links for

#51 egonw closed 5 years ago
1
Unify HMDB IDs

#50 DeniseSl22 closed 6 years ago
2
CHEBI querying should be unified to one structure

#49 DeniseSl22 closed 6 years ago
1
explore why KNApSAcK IDs are not normalized to Wikidata IDs

#48 egonw closed 6 years ago
6
https://rdf.wikipathways.org/ does not work

#47 egonw closed 4 years ago
2
Links to Wikidata for Genes and Proteins

#46 egonw opened 6 years ago
0
Add DOIs using mappings from Wikidata

#45 egonw closed 3 years ago
4
register WikiPathways RDF on DataHub to LOD cloud inclusion

#44 egonw opened 6 years ago
0
uniform bdbFoo predicted not outputted when Foo is the current ID

#43 egonw closed 6 years ago
0
confirm availability of the GPML and WP ontologies in downloadable RDF

#42 egonw closed 6 years ago
2
confirm include dcterms:modified on SPARQL end point

#41 egonw closed 6 years ago
2
RDF fails to generate, due to GPML parsing error

#40 egonw closed 3 years ago
5
link set between WPRDF IRI and the Pathway Ontology

#39 egonw opened 7 years ago
1
update VoID for data.wp.org to have resolving (sub) data sets IRIs

#38 egonw closed 3 years ago
0
merge rdf.wikipathways.org with main download side

#37 egonw closed 7 years ago
0
VoID headers missing on http://data.wikipathways.org/20170210/rdf/

#36 egonw closed 7 years ago
5
consider submitting templates for SPANG

#35 egonw opened 7 years ago
0
date/year information (of last edit) of pathway is missing

#34 egonw opened 7 years ago
1
include author information

#33 egonw opened 7 years ago
9
include curation tag information for pathways

#32 egonw closed 7 years ago
2
possible wrong namespace assignment "http://vocabularies.wikipathways.org/gpml#PublicationXref"

#31 micheldumontier opened 7 years ago
0
possible wrong namespace assignment http://vocabularies.wikipathways.org/wp#DataNode

#30 micheldumontier opened 7 years ago
3
check ontology and curation tags

#29 egonw closed 7 years ago
1
use skos:closeMatch for Reactome pathways

#28 egonw opened 8 years ago
1
NPE during conversion of WP3639

#27 egonw closed 8 years ago
0
Incorrect handling of BioPax info

#26 egonw closed 8 years ago
0
VoID could include the Reactome version used in the release

#25 egonw closed 4 months ago
1
NullPointerException during RDF generation for WP3607(?)

#24 egonw closed 3 years ago
1
add link outs to Wikidata

#23 egonw closed 8 years ago
0
discuss wp:category

#22 egonw closed 3 years ago
3
Provide a HDT download file

#21 egonw closed 8 years ago
0
Have the Jenkins job merge the individual files also in a single file

#20 egonw closed 8 years ago
1
DataNodes of type "Complex" are not typed as such in the WPRDF

#19 egonw closed 8 years ago
1

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