willtownes glmpca issues

willtownes / glmpca

GNU Lesser General Public License v3.0

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issues

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Is it appropriate/possible to run IntegrateData following GLM-PCA?

#37 jeremymsimon opened 1 year ago
1
Having a combination of cite-seq and gene expression data as input

#36 jtheorell opened 2 years ago
2
Results of parameter minibatch = 'none' vs 'memoized'

#35 jyuan1322 closed 2 years ago
2
P-values for covariate coefficients?

#34 leon-seranova closed 2 years ago
2
Link to SVA/RUV methods?

#33 leon-seranova opened 2 years ago
2
How to choose the number of principal components in GLM-PCA?

#32 YushaLiu opened 3 years ago
7
Add vignette how to do feature selection

#31 frederikziebell opened 3 years ago
1
Batch correction - strange convergence

#30 hanbin973 opened 3 years ago
11
Mixed distribution columns

#29 spinkney opened 3 years ago
7
Return factors and loadings as matrices instead of data frames

#28 willtownes opened 3 years ago
2
Allow predict.glmpca to infer factors from new data given a trained model

#27 jakeyeung opened 4 years ago
0
Poisson GLM PCA: Convergence issues with avagrad

#26 jlause opened 4 years ago
1
Feature request: Fixing nb.theta during optimization

#25 willtownes opened 4 years ago
0
Possible usecase for glmGamPoi

#24 frederikziebell closed 4 years ago
1
SpatialFeaturePlot - "could not find function"

#23 venchi9 closed 4 years ago
0
Speed up matrix operations with parallelization

#22 willtownes opened 4 years ago
0
Seurat RunGLMPCA Error

#21 TJCooperIL closed 4 years ago
3
Reduce glmpca_family memory consumption

#20 willtownes opened 4 years ago
1
Feature-specific negative binomial shape parameters

#19 willtownes opened 4 years ago
0
Disk-based data

#18 willtownes opened 4 years ago
0
an error of GLMPCA

#17 1156054203 closed 4 years ago
2
Computation Speed

#16 SONGDONGYUAN1994 closed 4 years ago
1
improve negative binomial overdispersion estimation

#15 willtownes opened 4 years ago
3
Variance explained

#14 frederikziebell closed 4 years ago
2
Show how to adjust for batch effects in vignette and documentation

#13 willtownes opened 4 years ago
0
Updated paper link

#12 flying-sheep closed 4 years ago
2
Sparse Matrix support

#11 davemcg closed 4 years ago
8
Can glmpca perform factor analysis?

#10 seawavevan opened 4 years ago
1
GLMPCA on lognormal distributed data

#9 JauntyJJS closed 4 years ago
4
Gaussian family

#8 willtownes opened 4 years ago
0
divergence even after increased penalties

#7 ttriche closed 4 years ago
7
automatic penalty increase with warning

#6 SamueleSoraggi closed 4 years ago
5
Error if `L=1`

#5 const-ae closed 4 years ago
2
rolled R version back to 3.5, tests pass

#4 rmflight closed 4 years ago
1
Discuss seed?

#3 mikelove closed 4 years ago
2
Give vignette a meaningful title in the index

#2 PeteHaitch closed 4 years ago
2
Include deviance function

#1 bc2zb closed 4 years ago
2