issues
search
willwerscheid
/
flashier
A faster and angrier package for EBMF.
https://willwerscheid.github.io/flashier/
Other
10
stars
11
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
flashier:::plot.flash reorders the loadings
#133
parsifal9
opened
1 week ago
5
Zero rows
#132
surbut
opened
1 week ago
2
scaling of factors in plot_type = "scatter"
#131
stephens999
opened
1 month ago
9
intro to flashier vignette needs update?
#130
dzemmour
closed
1 month ago
3
documentation for S needs improving
#129
stephens999
opened
3 months ago
2
allow for different update styles
#128
willwerscheid
opened
4 months ago
0
change "factor/loadings pairs" to "k" or "components" in docs
#127
willwerscheid
opened
4 months ago
0
Allow zero rows if var_type = 0 or if S is set
#126
willwerscheid
closed
4 months ago
2
allow single prior for all L/F
#125
willwerscheid
opened
4 months ago
0
implement alt-flash
#124
willwerscheid
opened
4 months ago
0
Fix or remove "Estimate of factor X is numerically zero!" warnings
#123
pcarbo
opened
4 months ago
0
Feedback on new plot functions
#122
pcarbo
opened
4 months ago
18
Add warning when S is not specified.
#121
pcarbo
opened
4 months ago
0
Add column names to F, L outputs
#120
pcarbo
opened
5 months ago
0
pass prior parameters accross iteration
#119
william-denault
closed
4 months ago
4
Avoid multiple computation of sum(Y^2)
#118
YushaLiu
closed
4 months ago
1
Create heatmap function
#117
pcarbo
closed
4 months ago
1
Create structure_plot function
#116
pcarbo
closed
4 months ago
1
Add flashier_single_cell packages to "Suggests"
#115
pcarbo
opened
5 months ago
0
Add single cell intro vignette
#114
xxie6
closed
5 months ago
1
Show extrapolation info in output
#113
willwerscheid
opened
7 months ago
0
don't use `identical` when checking `kset`
#112
willwerscheid
opened
7 months ago
0
Should setting fix_g in flash_ebnm be allowed?
#111
pcarbo
opened
9 months ago
0
Improve flash_factors_init docs
#110
pcarbo
opened
9 months ago
0
Custom covariate driven shrinkage in flash
#109
william-denault
opened
9 months ago
7
update flash_factors_init example to use flash_add_intercept
#108
willwerscheid
opened
10 months ago
0
Cant initialize only one factor with flash_factor_init
#107
jean997
opened
10 months ago
2
truncate gtex row names?
#106
willwerscheid
opened
10 months ago
1
Allow (sparse) Matrix in low rank input
#105
stephens999
closed
4 months ago
18
Nullcheck error
#104
jean997
opened
10 months ago
0
flash_fit_get_est_tau() vs flash_fit_get_tau()
#103
jean997
opened
10 months ago
1
slow initialization
#102
stephens999
closed
4 months ago
6
replace magrittr pipe with base r pipe
#101
willwerscheid
closed
4 months ago
1
add `flash_update_data` function
#100
willwerscheid
closed
4 months ago
2
make flash_factors_init work with empty flash fit
#99
stephens999
closed
11 months ago
1
Missing detail in help(ldf)
#98
pcarbo
closed
1 year ago
2
Add set.seed to vignettes
#97
pcarbo
closed
1 year ago
1
Named outputs from sampler
#96
pcarbo
closed
1 year ago
2
Comparing factors from flash fits in vignettes
#95
pcarbo
closed
1 year ago
7
Remove verbose = 0 in flash calls in vignettes
#94
pcarbo
closed
1 year ago
2
Loading packages in vignettes
#93
pcarbo
closed
1 year ago
1
Inconsistent matrix transpose notation
#92
pcarbo
closed
1 year ago
1
add new function flash_add_intercept
#91
willwerscheid
closed
1 year ago
1
might be nice to have a timeout parameter
#90
willwerscheid
closed
1 year ago
1
instead of adding new ldf method use an existing S3 method
#89
willwerscheid
opened
1 year ago
1
rename things
#88
willwerscheid
closed
1 year ago
2
update vignettes
#87
willwerscheid
closed
1 year ago
1
Error in example
#86
pcarbo
closed
1 year ago
1
Missing imports and undefined variables in functions
#85
pcarbo
closed
1 year ago
1
Undocumented … argument in ldf
#84
pcarbo
closed
1 year ago
1
Next